PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn263221 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 581aa MW: 65284.4 Da PI: 4.8248 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 444.8 | 6e-136 | 211 | 580 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++lL++cA ++s+g+ + a+++++ l++++s +g+p++R+aay++eALaar+a s+++lykal+++e + s ++l+a+++++ev+P+++f++++aN Achn263221 211 KQLLYDCAVMISEGNIADASTVINDLRQRVSIQGSPTERIAAYMVEALAARVATSGKGLYKALKCKEPP---SNDRLSAMQVLFEVCPCFRFGFMAANG 306 589*****************************************************************9...9************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 aI ea + e+r+HiiDfdi+qG Q+++L+q+La++p++pp+lR+Tgv++pes+ s l+ +g+rL+++A+el+v+fef++ va +++++++ +L+++ Achn263221 307 AIIEASKDEKRIHIIDFDINQGSQYITLIQTLAKQPGKPPQLRLTGVDDPESVqrSVGGLKVIGQRLEELAKELKVQFEFRA-VAANTAEVNPAMLNCR 404 ***************************************************9988999************************.7999************ PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 gEal+Vn+++qlh+++desvs+ ++rd++L++vks +Pk+v+vveq++++n+++Fl rf+ea +yysa++dsl+a+lpr+s++r +vE+++l+r+ivn Achn263221 405 AGEALIVNFAFQLHHMPDESVSTVNQRDQLLRMVKSFNPKLVTVVEQDVNTNTAPFLPRFAEAYNYYSAVYDSLDATLPRDSQDRLNVEKHCLARDIVN 503 *************************************************************************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vaceg+er+er e ++kWr+r+++aGFkp p+s+++++ ++ l++++ ++ y+v++esg+l + W+dr L+++SaWr Achn263221 504 IVACEGEERIERYELAGKWRARMMMAGFKPWPISSNVNELIRKLIKQYCDR-YKVKDESGALHFAWEDRVLIVASAWR 580 *************************************************66.*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.634 | 184 | 561 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-133 | 211 | 580 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
MSLVRFQDQY ARSYGNPKLY ALNGSNDSPG ISTPIFNTEK HNKIMYATES CSSESYDLKY 60 FLDSPTEEFV HSSSYSNSEN PFHPQVRSTS MTALTPFNSF VAMQHQDPYQ ANFESEYLES 120 QSPDAVDYGE DEMRLKLREL ERALLDDNDV DEDDDAFGPD QSMEIDGEWA HPICNPLRHE 180 SPKESSSSDS NLSSISSTKE ISLTSSPQTP KQLLYDCAVM ISEGNIADAS TVINDLRQRV 240 SIQGSPTERI AAYMVEALAA RVATSGKGLY KALKCKEPPS NDRLSAMQVL FEVCPCFRFG 300 FMAANGAIIE ASKDEKRIHI IDFDINQGSQ YITLIQTLAK QPGKPPQLRL TGVDDPESVQ 360 RSVGGLKVIG QRLEELAKEL KVQFEFRAVA ANTAEVNPAM LNCRAGEALI VNFAFQLHHM 420 PDESVSTVNQ RDQLLRMVKS FNPKLVTVVE QDVNTNTAPF LPRFAEAYNY YSAVYDSLDA 480 TLPRDSQDRL NVEKHCLARD IVNIVACEGE ERIERYELAG KWRARMMMAG FKPWPISSNV 540 NELIRKLIKQ YCDRYKVKDE SGALHFAWED RVLIVASAWR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-63 | 217 | 579 | 26 | 378 | Protein SCARECROW |
5b3h_A | 3e-63 | 217 | 579 | 25 | 377 | Protein SCARECROW |
5b3h_D | 3e-63 | 217 | 579 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028112088.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_028112089.1 | 0.0 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A2R6QYR2 | 0.0 | A0A2R6QYR2_ACTCH; Scarecrow-like protein | ||||
STRING | cassava4.1_004272m | 0.0 | (Manihot esculenta) | ||||
STRING | XP_010104285.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8967 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Publications ? help Back to Top | |||
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