PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn261641

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

CAMTA

Protein Properties

Length: 1226aa MW: 137575 Da PI: 5.1299

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn261641	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	167.7	1.9e-52	210	325	2	116
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 ++e ++rwlk+ e++ iLen+++ +lt+el+++p sgsl+L+n++++r+frkDG++w+kkkdg+tv E+he+LKvg++e+l+cyYa++e+n++fqrr+y Achn261641 210 VREaQTRWLKPAEVLFILENYKEDQLTHELPKKPASGSLFLFNKRVLRFFRKDGHNWRKKKDGRTVGEAHERLKVGNTEALNCYYARGEQNQNFQRRSY 308 45669******************************************************************************************** PP CG-1 100 wlLeeelekivlvhyle 116 w+L+ +e+ivlvhy++ Achn261641 309 WMLDPVYEHIVLVHYRD 325 *************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.84	206	332	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.3E-68	209	327	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	2.7E-47	212	325	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	8.1E-7	666	752	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	1.92E-14	668	752	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.2E-7	668	751	IPR002909	IPT domain
CDD	cd00102	5.12E-4	668	752	No hit	No description
PROSITE profile	PS50297	16.228	866	958	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.6E-14	868	959	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.04E-15	870	960	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.43E-13	871	958	No hit	No description
Pfam	PF12796	9.3E-8	882	959	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0021	899	931	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.446	899	931	IPR002110	Ankyrin repeat
SMART	SM00248	1600	938	967	IPR002110	Ankyrin repeat
SMART	SM00015	26	1016	1038	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.913	1017	1046	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	1.14E-5	1076	1128	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	10	1076	1098	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.693	1077	1106	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.018	1080	1097	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	2.5E-4	1099	1121	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.157	1100	1128	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.2E-5	1102	1121	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1226 aa Download sequence Send to blast
MSYGTGPSYQ VSDSSSSSSS NESYHEDPAP EFDMQTKDTE FQWNHMMLQQ QMIAQQYYLM 60 QSQNASLWGG SLPGHVVIQR GRQTGATLLK NDYFSENPTY ESKFRRRFRM SRELFLRIKR 120 SLKKHLSGSA KTVFGSVNSV NDLVHEWLKL SVGKWVESES LLRSSILCLY AIVLSEIDLQ 180 ECGVFATADS VLTSMNTSMD PSGYNIDDLV REAQTRWLKP AEVLFILENY KEDQLTHELP 240 KKPASGSLFL FNKRVLRFFR KDGHNWRKKK DGRTVGEAHE RLKVGNTEAL NCYYARGEQN 300 QNFQRRSYWM LDPVYEHIVL VHYRDISEGR HSSESISLLS TVPTSTFRQS PSSSNAPQYP 360 GSTSAISELS KPHQSPGSVE DSSDAVIKSN GMHHLNRCKS MGEISSSSLF EVSQALQRIE 420 EQLSLNDDSL EKNDPFWRGN DNSNDSDFII NDDLEEIDPF WNGNENSNDS DIIINDPGRF 480 ALEEIDPFWS GNENSNDSDF IINDQDQFTA FPDDLSNLML QRESVGDGKN NHQALAQEIT 540 VEHKDSLSSK EILDFCKSSP IPEFEERKLH TLDGNECDNF LNPGSNTNLQ LTACSDNPSM 600 FENPVELPAS MSLSQEVENF NFPAYSPVTN FNHTDHPDYL TTLFDQGQIG LDLKTDSRLT 660 IAQKQKFTVR EISPEWGYAY EATKVVIVGS FPCDPSEVAW NCMFGGIEIP VRIIQEGVIC 720 FQAPPHPPGK VTLCIVSDNR ESCSEDIVFE YRVSPSSCGQ CSSSQAETTK SPEELLLLVR 780 FVRMLLLDPS VQNEDITESV TDPFGQFKAG EDSWGHVIDA LLDCSWTLSG TTDWLLQELL 840 KDKLQQWLSS RSQGAYNRQD SSLSRKAQGV IHMVAGLGFE WALNPILNSG VSINFRDING 900 WSALHWAARF GREKMVAALI ASGASAGEVT DPNPQDPTGK TPAFIAATSG HKGLAGYLSE 960 VALTSHLSSL TLEENEKSKG SADVEAENAV NSISQTSLAT DEDETSLKDT LEAVRNATQA 1020 ASRIQAAFRE HSFRKRQQRE AAAPSAAGSE DEYNILANDI TGLSAASKLA FGNARDYNTA 1080 ALAIQKKYRG WKGRKNYIAI RHKVVKIQAH VRGYQARKQY KIFCWAVSVL EKIVLRWRRK 1140 GVGLRGFRPE MESIDESEDE DILKLFRKQK VDKAIKEAVS RVLSMVDSLE ARKQYHRLLE 1200 RYRQVKAELE GPQSEITSMS QSDFS*

Sequence ? help Back to Top

Protein Sequence Length: 1226 aa Download sequence Send to blast

MSYGTGPSYQ VSDSSSSSSS NESYHEDPAP EFDMQTKDTE FQWNHMMLQQ QMIAQQYYLM  60
QSQNASLWGG SLPGHVVIQR GRQTGATLLK NDYFSENPTY ESKFRRRFRM SRELFLRIKR  120
SLKKHLSGSA KTVFGSVNSV NDLVHEWLKL SVGKWVESES LLRSSILCLY AIVLSEIDLQ  180
ECGVFATADS VLTSMNTSMD PSGYNIDDLV REAQTRWLKP AEVLFILENY KEDQLTHELP  240
KKPASGSLFL FNKRVLRFFR KDGHNWRKKK DGRTVGEAHE RLKVGNTEAL NCYYARGEQN  300
QNFQRRSYWM LDPVYEHIVL VHYRDISEGR HSSESISLLS TVPTSTFRQS PSSSNAPQYP  360
GSTSAISELS KPHQSPGSVE DSSDAVIKSN GMHHLNRCKS MGEISSSSLF EVSQALQRIE  420
EQLSLNDDSL EKNDPFWRGN DNSNDSDFII NDDLEEIDPF WNGNENSNDS DIIINDPGRF  480
ALEEIDPFWS GNENSNDSDF IINDQDQFTA FPDDLSNLML QRESVGDGKN NHQALAQEIT  540
VEHKDSLSSK EILDFCKSSP IPEFEERKLH TLDGNECDNF LNPGSNTNLQ LTACSDNPSM  600
FENPVELPAS MSLSQEVENF NFPAYSPVTN FNHTDHPDYL TTLFDQGQIG LDLKTDSRLT  660
IAQKQKFTVR EISPEWGYAY EATKVVIVGS FPCDPSEVAW NCMFGGIEIP VRIIQEGVIC  720
FQAPPHPPGK VTLCIVSDNR ESCSEDIVFE YRVSPSSCGQ CSSSQAETTK SPEELLLLVR  780
FVRMLLLDPS VQNEDITESV TDPFGQFKAG EDSWGHVIDA LLDCSWTLSG TTDWLLQELL  840
KDKLQQWLSS RSQGAYNRQD SSLSRKAQGV IHMVAGLGFE WALNPILNSG VSINFRDING  900
WSALHWAARF GREKMVAALI ASGASAGEVT DPNPQDPTGK TPAFIAATSG HKGLAGYLSE  960
VALTSHLSSL TLEENEKSKG SADVEAENAV NSISQTSLAT DEDETSLKDT LEAVRNATQA  1020
ASRIQAAFRE HSFRKRQQRE AAAPSAAGSE DEYNILANDI TGLSAASKLA FGNARDYNTA  1080
ALAIQKKYRG WKGRKNYIAI RHKVVKIQAH VRGYQARKQY KIFCWAVSVL EKIVLRWRRK  1140
GVGLRGFRPE MESIDESEDE DILKLFRKQK VDKAIKEAVS RVLSMVDSLE ARKQYHRLLE  1200
RYRQVKAELE GPQSEITSMS QSDFS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028051249.1	0.0	calmodulin-binding transcription activator 4-like
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A2R6REJ0	0.0	A0A2R6REJ0_ACTCH; Calmodulin-binding transcription activator like
STRING	VIT_01s0010g03850.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3932	20	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]