PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn260831 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 262aa MW: 29034 Da PI: 8.2321 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.4 | 3e-32 | 64 | 121 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++v Y+eClkNhAas+Gg+a+DGCgEfmps geegt +al C+AC+CHRnFHR+e e e Achn260831 64 KRVFYRECLKNHAASMGGNALDGCGEFMPS-GEEGTLEALLCSACNCHRNFHRKELEGE 121 6899*************************9.999********************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.2E-29 | 66 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.4E-31 | 68 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 28.139 | 68 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-23 | 68 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.33E-21 | 176 | 250 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.5E-33 | 177 | 251 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 8.503 | 187 | 251 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 9.4E-27 | 189 | 245 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MELSSQEVGE IPIPINASYG HPMIHHHHII PTTTAQPCSN GPTSLPTTTT AAQEAQAQIM 60 PYKKRVFYRE CLKNHAASMG GNALDGCGEF MPSGEEGTLE ALLCSACNCH RNFHRKELEG 120 EQNYNCDQFF HRVGRKVILG HASNILGPKA FQTQQMVLPY SVGPIGSESD ELEEGGGGGD 180 GGGPPPQMKK RFRTKFTQEQ KEKMLGFAER VGWKMQKQEE NVVQQLCQEI GIKRRVLKVW 240 MHNNKHNLAK KNISNISQNP I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 7e-23 | 188 | 247 | 16 | 75 | ZF-HD homeobox family protein |
1wh7_A | 7e-23 | 190 | 247 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00258 | DAP | Transfer from AT2G02540 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021617744.1 | 1e-105 | zinc-finger homeodomain protein 4-like | ||||
Swissprot | O64722 | 3e-75 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A2R6R173 | 0.0 | A0A2R6R173_ACTCH; Zinc-finger homeodomain protein | ||||
STRING | cassava4.1_013112m | 1e-104 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5154 | 23 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 2e-69 | homeobox protein 21 |
Publications ? help Back to Top | |||
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