PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn258341

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 674aa MW: 77925.2 Da PI: 8.0376

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn258341	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.3	5.3e-23	65	152	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y++YA++ GFs+rks+++ s ++++ +f Cs+eg+r+++ k++k+ ++r t +gCkakl+++++ +gkw+v+k++ eHnHel++ Achn258341 65 CYRAYARRKGFSIRKSHTRLS-KDKSLLGVEFACSREGYRRPSYWKKHKNVENRCATMIGCKAKLRLRRD-EGKWVVSKFDVEHNHELCS 152 7**************9999.7777**************9999****************99.***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.8E-20	65	151	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.4E-33	272	365	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.262	553	589	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-7	553	588	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.5E-4	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence Send to blast
MATSSDSADI VLPNDCLEQE SVDDLDNVDL LQNETQPPVK SSLYSCPVEP CEGMVFDELE 60 DAETCYRAYA RRKGFSIRKS HTRLSKDKSL LGVEFACSRE GYRRPSYWKK HKNVENRCAT 120 MIGCKAKLRL RRDEGKWVVS KFDVEHNHEL CSPETTPLLP GHRKITRAQK NLIDVLNVSG 180 IPTTKIMSVL RESGGDSNGG YTGMDVQNYL GSKKRKLLED GDAQRMSNYF IKRQSENLDF 240 VYAVQVDGSS CMGNCFWADA RSRLAFQYFG DVVCFDATYI ANRYGMPFVP FAGVNHHQQS 300 VMFGCTVLVN KTTESYIWLF KAWVEAMGGR TPSVIITDDD KAMAMAISQV LPNTTHRLCM 360 WHTLRKVPEY LAHVYNKYPS FHEEFHHCIH DTVTIEEFEN EWNQLMGKYD LRGDSWLKDL 420 YMRREKWVPA YLRMIFCAGM STTQRSESMH KFFKAIVQSS TLASDFVYQY EIALDKRFAS 480 EKERDMETTT TKAILKTCYK MEEEAATTYT RKIFLLFQEE LFSSQKHRAS KYCEEGTRKT 540 YRVLPNGKEK PMYEVVLDGI ENKAICLCHM FEFVGIPCRH ILAVFVKKYL VDYLPQQYVL 600 RRWTTNAKRH GEVVVHEGPQ ISSTLMRNSL MMEFLKVVEE GQKSQRKHHH LTVALRKVHG 660 ELLAMDDERY NRQ*

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence Send to blast

MATSSDSADI VLPNDCLEQE SVDDLDNVDL LQNETQPPVK SSLYSCPVEP CEGMVFDELE  60
DAETCYRAYA RRKGFSIRKS HTRLSKDKSL LGVEFACSRE GYRRPSYWKK HKNVENRCAT  120
MIGCKAKLRL RRDEGKWVVS KFDVEHNHEL CSPETTPLLP GHRKITRAQK NLIDVLNVSG  180
IPTTKIMSVL RESGGDSNGG YTGMDVQNYL GSKKRKLLED GDAQRMSNYF IKRQSENLDF  240
VYAVQVDGSS CMGNCFWADA RSRLAFQYFG DVVCFDATYI ANRYGMPFVP FAGVNHHQQS  300
VMFGCTVLVN KTTESYIWLF KAWVEAMGGR TPSVIITDDD KAMAMAISQV LPNTTHRLCM  360
WHTLRKVPEY LAHVYNKYPS FHEEFHHCIH DTVTIEEFEN EWNQLMGKYD LRGDSWLKDL  420
YMRREKWVPA YLRMIFCAGM STTQRSESMH KFFKAIVQSS TLASDFVYQY EIALDKRFAS  480
EKERDMETTT TKAILKTCYK MEEEAATTYT RKIFLLFQEE LFSSQKHRAS KYCEEGTRKT  540
YRVLPNGKEK PMYEVVLDGI ENKAICLCHM FEFVGIPCRH ILAVFVKKYL VDYLPQQYVL  600
RRWTTNAKRH GEVVVHEGPQ ISSTLMRNSL MMEFLKVVEE GQKSQRKHHH LTVALRKVHG  660
ELLAMDDERY NRQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018806877.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like, partial
Refseq	XP_018855508.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like, partial
Refseq	XP_023879877.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2R6PQ89	0.0	A0A2R6PQ89_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	Migut.B01126.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-155	FAR1-related sequence 5