PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn258201
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 424aa    MW: 45538.8 Da    PI: 6.1996
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn258201genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.4e-101155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W++e d+ + +a + ++ +   +W++Ia+ ++ g++l ++++++ 
       Achn258201 11 TWSKEQDKAFENALATYPEEsvdRWEKIAADVP-GKSLQEIQHHYE 55
                     7*****************99*************.**********95 PP
2Myb_DNA-binding26.71.3e-08192231847
                      HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +d l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
       Achn258201 192 LDILFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 231
                      7899999********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.98458IPR017877Myb-like domain
SMARTSM007171.9E-9860IPR001005SANT/Myb domain
SuperFamilySSF466893.81E-101065IPR009057Homeodomain-like
PfamPF002494.6E-81155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-41156IPR009057Homeodomain-like
CDDcd001671.21E-81158No hitNo description
TIGRFAMsTIGR015571.4E-11192234IPR006447Myb domain, plants
PfamPF002492.3E-6192231IPR001005SANT/Myb domain
SuperFamilySSF466896.21E-10192237IPR009057Homeodomain-like
PROSITE profilePS500904.612193232IPR017877Myb-like domain
CDDcd001674.53E-5193232No hitNo description
SMARTSM007171.4193234IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-5195230IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MTADETDNSS TWSKEQDKAF ENALATYPEE SVDRWEKIAA DVPGKSLQEI QHHYELLVDD  60
IKDIESGRVP LPCYKSSSDG STSHSGEEGT SKKGGHGGNL NSDSNHGGKA SRIDQERRKG  120
IAWTEDEHRR DEEEIECTKI NMGHHKTRLM STELLGLNCD LQASIKELQE SYTLSVSRTV  180
FIYIKLTRPT TLDILFLLGL DKYGKGDWRS ISRNFVVTRT PTQVASHAQK YFIRLNSMNK  240
DRRRSSIHDI TSVNSGDVSV PQGPITGQTN GSAVGAPGKS NKPAPQTPVA PMGVGMYGAP  300
TIGQPIGPLV SAVGTPVNLP PPAHLAYGVR APVPGPVVPG APTNMGPVTY PMPRTSAHSL  360
IHMVDGGQDS RSADGSFRVF IRVESRERSS FVEVGRGLGG VEGFGEAVED VAGEEEGPLV  420
GGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1712771176RADIALIS
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016579878.11e-140PREDICTED: transcription factor DIVARICATA-like isoform X1
TrEMBLA0A2R6PC121e-156A0A2R6PC12_ACTCH; Transcription factor DIVARICATA like
TrEMBLA0A498IAQ11e-150A0A498IAQ1_MALDO; Uncharacterized protein
STRINGXP_010249027.11e-138(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-70MYB family protein