PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn255051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 774aa MW: 84487.3 Da PI: 6.3663 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 395.4 | 5.9e-121 | 401 | 770 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lLl+cAe+v+++++e+a+++L ++s+l++p g++ qR+aayf eA++arl++s+ +l ++lp ++ + ++++ ++a++lf+ +sP++kfsh+taNq Achn255051 401 LTLLLKCAEVVAADNFEEANSMLLEISQLSTPFGTSAQRVAAYFSEAMSARLLNSCLGLNATLPLIPALP-HTQKIVSAFQLFNGISPLVKFSHFTANQ 498 579************************************************************9888874.6788999********************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 aI ea+e+e+rvHiiD+di+qGlQWp L++ LasR++gpp +R+Tg+g s e+le+tg+rL++fA++lg+pfef + +a+++ +l++e+L+v+++ Achn255051 499 AIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRSGGPPFVRLTGLGT----SMEALEATGKRLSDFADKLGIPFEFFP-IAEKVGNLDPERLNVSKR 592 *************************************************....***************************.7***************** PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 Ea+a+++ h+l+d ++s + +L+l+k+l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl +++++eseer++vE++ll+rei+nv+ Achn255051 593 EAVAIHWLQ--HSLYDVTGSDTR----TLWLLKRLAPKVVTVVEQDLSH-GGSFLGRFVEAIHYYSALFDSLGESYGEESEERHVVEQQLLSREIRNVL 684 ********9..999988888877....**********************.789********************************************** PP GRAS 299 acegaerr........erhetlekWrerleeaGF.kpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaWr 374 a g +rr e+ ++++Wre+le++GF k ++l +aa+qa lll +++s+gy+++ e++g+l lgWkd L+++SaWr Achn255051 685 AVGGPSRRsssheeeeEEVSKFNNWREKLEQCGFfKGISLAGNAATQATLLLGMFPSNGYTLQlEDNGTLKLGWKDLCLLTASAWR 770 *99987642222222245567999*********7378**************************89999999**************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.483 | 374 | 749 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.0E-118 | 401 | 770 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 774 aa Download sequence Send to blast |
MARKRAASEI DQLQTEAGLQ RFMHRTGTPA ATNTLNHSTT MLMTASSATI SSGTYMGMGP 60 LLLPHHHQPQ PPPPPPQSQP QPPSLCVFSG LPLFPPDNTG QNTNVSPISS CVAGSTTSTS 120 GSGSGSGPME ETTTATAWID GIIKDLIHTS THVSIPQLIK NVREIILPCN PNLAALLEYR 180 LHSLTNMDPI PPNTTTTATA NNNNSNYPPP PESHETSSRK EARASGNLQQ LHRYHPNQLL 240 QGEMLLNLDS NAALANLPFP LPAEYYSSPS QNVHGIMNHY LNSAALTTTL VPTTPNPNIS 300 TTSTGNGDHH DQHLPNNIIN PTNRPSSISP ISMNHVRQSG RHQLYSQNQP QPQLEKPQVD 360 ESPPPPPPVP DQPATPAVST AITKKEEMQK KKRDEEGLHL LTLLLKCAEV VAADNFEEAN 420 SMLLEISQLS TPFGTSAQRV AAYFSEAMSA RLLNSCLGLN ATLPLIPALP HTQKIVSAFQ 480 LFNGISPLVK FSHFTANQAI QEAFEREDRV HIIDLDIMQG LQWPGLFHIL ASRSGGPPFV 540 RLTGLGTSME ALEATGKRLS DFADKLGIPF EFFPIAEKVG NLDPERLNVS KREAVAIHWL 600 QHSLYDVTGS DTRTLWLLKR LAPKVVTVVE QDLSHGGSFL GRFVEAIHYY SALFDSLGES 660 YGEESEERHV VEQQLLSREI RNVLAVGGPS RRSSSHEEEE EEVSKFNNWR EKLEQCGFFK 720 GISLAGNAAT QATLLLGMFP SNGYTLQLED NGTLKLGWKD LCLLTASAWR PLL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 0.0 | 384 | 771 | 3 | 380 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Also required for normal shoot gravitropism. Regulates the radial organization of the shoot axial organs. Binds to the promoter of MGP, NUC, RLK and SCL3. Restricts SHR movment and sequesters it into the nucleus of the endodermis. {ECO:0000269|PubMed:10631180, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15142972, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:22921914, ECO:0000269|PubMed:24302889, ECO:0000269|PubMed:8819871, ECO:0000269|PubMed:9375406, ECO:0000269|PubMed:9670559}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by SHR and by itself. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:11565032, ECO:0000269|PubMed:15314023}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028085361.1 | 0.0 | protein SCARECROW-like | ||||
Swissprot | Q9M384 | 0.0 | SCR_ARATH; Protein SCARECROW | ||||
TrEMBL | A0A2R6QZ84 | 0.0 | A0A2R6QZ84_ACTCH; Protein SCARECROW like | ||||
STRING | VIT_08s0056g00050.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8258 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54220.1 | 0.0 | GRAS family protein |