PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn254571
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 457aa    MW: 51103.9 Da    PI: 5.3152
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn254571genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS185.82.9e-571503482206
        GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 v++L+++A++++s++l+la+ +L+rl+++   p+g+p+qR+a+yf+eAL   l++         ++++t++++++++++a+k f +vsPi+ fs++taN
  Achn254571 150 VDVLIRAADCFESNELQLADVILERLNHQlPYPTGKPLQRAAFYFKEALLGLLTG---------STRSTHSSDVIQAIKAYKNFANVSPIIMFSNFTAN 239
                 689************************99899***********************.........677777788************************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                 qaIleav+g+  vH++Dfdi+ G+QW++++++ a+R+     ++pslRiT+v+++e   + e + ++++L++fA el++ f++++++++++e l+l+++
  Achn254571 240 QAILEAVDGSMFVHVVDFDIGFGGQWASFMREVADRAesrrVNSPSLRITAVVPEE--YAIESRLIRDNLNQFACELKIGFDIEFVLVRTFELLSLKAI 336
                 **********************************9995555669**********66..999999*********************************** PP

        GRAS 195 rvkpgEalaVnl 206
                 r+  gE++aV l
  Achn254571 337 RFIDGEKTAVLL 348
                 **********76 PP
2GRAS873.2e-27348455261374
        GRAS 261 leyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                 le+ys++++sl +a+++  +++ + +E++ll+++i  +v ++g++       +  Wre++ +aG+++v ls++a  qa++llrkv+++g++v + ++++
  Achn254571 348 LEFYSTVMESLeAASVGGSEDWIRRIENFLLRPKIFAAVEAAGRR-------APPWREAFAAAGLRAVGLSQFADFQAECLLRKVQVRGFHVAKLQAEM 439
                 89*********888888889***********************98.......89********************************************* PP

        GRAS 359 vlgWkdrpLvsvSaWr 374
                 vl+W++r+Lv++SaWr
  Achn254571 440 VLCWQQRALVATSAWR 455
                 ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098531.857123456IPR005202Transcription factor GRAS
PfamPF035141.0E-54150348IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MKVPCTTTQA HQPPSLKHRA TSFNEPKSVL DLGRSPSPSP AVNKPTPKSE VSAISESLFQ  60
SDDGSLHSVD QILNLEDWVW MRELGLHDDS TRIPQFNHSD SQLLPEFPPS HSFVPDDFSL  120
SSDQFPNESF NSVALSNDFH HMNNDDFNFV DVLIRAADCF ESNELQLADV ILERLNHQLP  180
YPTGKPLQRA AFYFKEALLG LLTGSTRSTH SSDVIQAIKA YKNFANVSPI IMFSNFTANQ  240
AILEAVDGSM FVHVVDFDIG FGGQWASFMR EVADRAESRR VNSPSLRITA VVPEEYAIES  300
RLIRDNLNQF ACELKIGFDI EFVLVRTFEL LSLKAIRFID GEKTAVLLEF YSTVMESLEA  360
ASVGGSEDWI RRIENFLLRP KIFAAVEAAG RRAPPWREAF AAAGLRAVGL SQFADFQAEC  420
LLRKVQVRGF HVAKLQAEMV LCWQQRALVA TSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-1815545425378Protein SCARECROW
5b3h_A4e-1815545424377Protein SCARECROW
5b3h_D4e-1815545424377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028076229.10.0scarecrow-like protein 15
SwissprotO232101e-121SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2R6RLA90.0A0A2R6RLA9_ACTCH; Scarecrow-like protein
STRINGXP_009803270.11e-164(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-110GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]