PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn254421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 204aa MW: 23409.5 Da PI: 6.8117 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63 | 4.3e-20 | 57 | 109 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq+++Le F +++++ ae++ +LA++lgL+ rqV vWFqNrRa+++ Achn254421 57 KRKLSEEQVNQLEMSFGNEHKLEAERKDKLASELGLDPRQVAVWFQNRRARWR 109 45899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 105 | 6e-34 | 56 | 147 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkrayda..lkeenerLekeveeLreel 91 +kr+ls+eqv++LE+sF +e+kLe erK +la+eLgl+prqvavWFqnrRAR+++k++E++y++Lk+++++ + + +e+L++ +e+++ l Achn254421 56 RKRKLSEEQVNQLEMSFGNEHKLEAERKDKLASELGLDPRQVAVWFQNRRARWRSKKMEEEYSKLKNEHETtvVLKLKEQLSDADKEIQKML 147 8********************************************************************98223456677777777777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.601 | 51 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-18 | 54 | 115 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.05E-17 | 56 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.41E-16 | 56 | 112 | No hit | No description |
Pfam | PF00046 | 2.9E-17 | 57 | 109 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-20 | 58 | 118 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.0E-6 | 82 | 91 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.0E-6 | 91 | 107 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MTTSMDHSQV ENEMVLISRF YPGIYSQLVP QQGEAKPRRR KKKSKGEGSS GGGLMRKRKL 60 SEEQVNQLEM SFGNEHKLEA ERKDKLASEL GLDPRQVAVW FQNRRARWRS KKMEEEYSKL 120 KNEHETTVVL KLKEQLSDAD KEIQKMLERC DGISSNSPSS SFSMEAMGPP FVGEFGMEGF 180 ENIFNVPENN YINNGMDWVD LYM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 36 | 40 | PRRRK |
2 | 40 | 58 | KKKSKGEGSSGGGLMRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028109158.1 | 2e-92 | homeobox-leucine zipper protein ATHB-40-like | ||||
Swissprot | Q9ZU70 | 2e-66 | ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21 | ||||
TrEMBL | A0A2R6RLA4 | 1e-120 | A0A2R6RLA4_ACTCH; Homeobox-leucine zipper protein like | ||||
STRING | XP_009590483.1 | 5e-87 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 3e-57 | homeobox protein 40 |
Publications ? help Back to Top | |||
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