PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn253991

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bZIP

Protein Properties

Length: 296aa MW: 32435.9 Da PI: 7.0362

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn253991	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.5	3.4e-14	102	150	10	58
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 + +NRe+ArrsR+RK+a + eLe+ v +L eN++L ++l ++ ++ + Achn253991 102 MLSNRESARRSRRRKQAHLTELETQVSQLRVENSSLLERLTDISHKYNE 150 78***********************************999988877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.3E-13	93	157	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.41E-10	101	147	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.5E-10	102	149	No hit	No description
Pfam	PF00170	1.4E-11	102	148	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.542	105	150	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	1.7E-35	164	285	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MDSRETQIDR KDPKPMVEEE PNHDHNRCET QGTRENLRKH GWGTMDTQSD PKDSFDPDVN 60 VTLAKAGSGS GLHKGQDKDA GGPLAIPSWQ AMQKKSGAQA GMLSNRESAR RSRRRKQAHL 120 TELETQVSQL RVENSSLLER LTDISHKYNE AAVDNRVLKA DVETLRAKIA EETVNRVTGL 180 NPLFQAMSEV STMDLPSFAG SPSDTSADAA VPVQDGPKQH FYQSPSHIYM STPDPRIQND 240 FVDIPLADNT QQNPTTVVGN KMGRTASMQR VAGLENLQKR IRGGANSRGT HGSGE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	116	RRSRRRKQ
2	111	116	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019229152.1	3e-97	PREDICTED: light-inducible protein CPRF2
Swissprot	Q99090	3e-74	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A2R6S0I4	1e-125	A0A2R6S0I4_ACTCH; Light-inducible protein
STRING	XP_009787496.1	5e-96	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2934	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.1	2e-38	bZIP family protein

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115]