PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn253821

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

G2-like

Protein Properties

Length: 294aa MW: 31589.8 Da PI: 6.8648

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn253821	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.5	3.5e-34	36	90	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m vkgLtl+h+kSHLQkYRl Achn253821 36 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMAVKGLTLYHLKSHLQKYRL 90 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.53	33	93	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.6E-33	33	91	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-17	35	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-24	36	91	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-7	38	89	IPR001005	SANT/Myb domain
Pfam	PF14379	9.8E-27	133	178	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0010628	Biological Process	positive regulation of gene expression
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MFSAIGSGVG VHGDFQGLDG PHLAGDPCLV LTTDPKPRLR WTAELHERFV DAVTQLGGPD 60 KATPKTIMRT MAVKGLTLYH LKSHLQKYRL GKQSCKDLPD NSKDASCLAE SQDTDSSASS 120 SSKIAQDLND GYHVTEALRV QMEVQRRLHD QLEVQRRLQL RIEAQGKYLQ SILEKACKVL 180 NDQAAATAGL EAAREELSEL AIKASNDSNG LVPVDALKVP SISELAVSLE NKNPSNLPAR 240 FGDCSIDSCL TSNGSLVSPM GVASQAAAMK KRPRPLFGNG DSVPLEWMIT NSG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	36	92	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	36	92	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-20	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	36	92	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	36	92	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	36	92	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	36	92	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	36	92	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	36	92	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	36	92	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	274	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028102122.1	1e-167	protein PHR1-LIKE 3-like
Swissprot	Q8LAJ7	1e-126	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A2R6R8V4	0.0	A0A2R6R8V4_ACTCH; Protein PHR1-LIKE like
STRING	XP_002518104.1	1e-161	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3791	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-112	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]