PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn253771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 439aa MW: 48866.4 Da PI: 9.4969 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 273 | 321 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r++lg+f+taeeAa a++ a+ l+g Achn253771 273 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAFAYDTAAYILRG 321 8******9.**********955...5**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.79E-31 | 271 | 331 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.0E-31 | 272 | 330 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.234 | 272 | 329 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.2E-22 | 272 | 330 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-34 | 272 | 335 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 273 | 284 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-11 | 273 | 320 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 295 | 311 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MHASINRKNG GRKSIKNGKH ELKVINFFSL EQADLTQTNN FSFVNKKIAS MENKFPTMEK 60 EFPSYLQVMA TGSSVCLDAA NVLGIANETL CRDGGGGSSS SVKLSSSSSD RIFSSLESNS 120 PTETLSTIPH TNAHGGYIPL NFLKSFEPSS PPSSSSPLKS PNLGLFMQKH SIFDMSTQAS 180 TESPRKTQMC EPVLSSPYHP FSVPQLGQSQ LQQGIEWIKI NQNTTNYSSK GFSDYWLSTT 240 KTQPMKYIGR RMQPPNYQKA TLPSTSPCER KLFRGVRQRH WGKWVAEIRL PRNRTRVWLG 300 TFDTAEEAAF AYDTAAYILR GDYAHLNFPD LKHQLASSAN CATKALLEAK LQAMSGNKKA 360 IDPQPTSPKK DLFKGLSHID LTRREWEFDL ESKAGSEMVM IENKKKSTQE LLSDVEAVQL 420 SRIPSLDMDM IWDALPDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 271 | 329 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028118941.1 | 1e-138 | ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | A0A2R6R8V0 | 0.0 | A0A2R6R8V0_ACTCH; Ethylene-responsive transcription factor | ||||
STRING | EOY05285 | 1e-109 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10921 | 18 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13620.1 | 6e-59 | ERF family protein |