PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn253571
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 263aa    MW: 29757.8 Da    PI: 5.5119
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn253571genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.44.4e-102052134
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34
                     rg+WT eEd ll++++  +G g+W++ a++ g g
       Achn253571 20 RGPWTLEEDTLLIHYISSHGEGRWNLLAKHSG-G 52
                     89****************************99.4 PP
2Myb_DNA-binding28.82.9e-0964852446
                     HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
                     W++Ia++++ gRt++++k++w++
       Achn253571 64 WSKIAQHLP-GRTDNEIKNYWRT 85
                     *********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.021591IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-91754IPR009057Homeodomain-like
SuperFamilySSF466891.55E-131883IPR009057Homeodomain-like
SMARTSM007179.9E-131989IPR001005SANT/Myb domain
PfamPF002492.1E-82055IPR001005SANT/Myb domain
CDDcd001671.66E-112285No hitNo description
Gene3DG3DSA:1.10.10.601.1E-106386IPR009057Homeodomain-like
PfamPF002493.0E-76485IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MASLSKCPSS SSDEDGELRR GPWTLEEDTL LIHYISSHGE GRWNLLAKHS GGIGRFEENW  60
EELWSKIAQH LPGRTDNEIK NYWRTRVQKQ ARYLNIDSNS IAFQQLIRSF WMPRLLQKIQ  120
LGSSKDSATN NQHFINNHPQ VCRHKENVQT TDETSQISVA SSSESMNSSS HMPQVLAEYP  180
TSPFHAMGTN NDLNTFLKGC YYNDNISYDM EAFTLESMAG PGGLEGPIGG CHVDKNNWLN  240
GSNLGDHSLW NMDESWQFSQ EQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9447691e-38GU944769.1 Camellia sinensis MYB mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028070638.17e-85transcription factor MYB24-like
TrEMBLA0A2R6PCI31e-163A0A2R6PCI3_ACTCH; Transcription factor like
STRINGVIT_17s0000g03560.t018e-77(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.21e-43myb domain protein 116