PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn253421
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 473aa    MW: 48679 Da    PI: 8.748
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn253421genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.11.8e-211759345
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 en+sn qvtfskRr g++KKA+ELS+LC+ae a+i+fs+  k
  Achn253421 17 MENESNLQVTFSKRRSGLFKKASELSILCGAEMAIIVFSPGSK 59
                79*************************************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-28766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.432767IPR002100Transcription factor, MADS-box
CDDcd002656.18E-34879No hitNo description
SuperFamilySSF554554.71E-25878IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-19929IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231663IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-192944IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-194465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MAERKTRGRQ RVAMAKMENE SNLQVTFSKR RSGLFKKASE LSILCGAEMA IIVFSPGSKA  60
FSFGHPSVDA VIDRFLTGNQ VPPNVTNQLV EAQRNAAVRD MNVRLMQLQE MLEAERKRGA  120
KLDQERAASR SQRSWEAPID ELGLEQLEQL KAAMENLRDN VALHVEKLMQ EEQQAAEAAE  180
NPSAGPGGFG VGDGGLPFME GRSSASGAPS QFQAGPSSAG GVGSSSAFTF QAGPSSFGGV  240
GDFAYVPGPS SVGANTGSCE GTHSVECSKS VSLPFYGGPS SFVTGTSSGT GTGPLQYQPG  300
PSFYVGTSTS GPSPYQPGPS TFVFGSSSDT ATFPYHGGLS SFVFGSFVGA SGSGPSSFVA  360
AGTNSTAALS YSARPSYFVG GTGTSVGVFP YPARPNSSNM AGPRTYASVL AFPPFPAGLS  420
SFRGRASIPL PVGRGGAGPS DAHDGPPDAS TPQPGGSSVP RGPNRGRGRV FF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-14892186Myocyte-specific enhancer factor 2A
3kov_B2e-14892186Myocyte-specific enhancer factor 2A
3kov_I2e-14892186Myocyte-specific enhancer factor 2A
3kov_J2e-14892186Myocyte-specific enhancer factor 2A
3p57_A2e-14892186Myocyte-specific enhancer factor 2A
3p57_B2e-14892186Myocyte-specific enhancer factor 2A
3p57_C2e-14892186Myocyte-specific enhancer factor 2A
3p57_D2e-14892186Myocyte-specific enhancer factor 2A
3p57_I2e-14892186Myocyte-specific enhancer factor 2A
3p57_J2e-14892186Myocyte-specific enhancer factor 2A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6PAC90.0A0A2R6PAC9_ACTCH; Agamous-like MADS-box protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-56AGAMOUS-like 62