PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn250311
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 350aa    MW: 38822.5 Da    PI: 5.4424
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn250311genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-20129178255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+W+AeIrdp++   + r +lg+f+taeeAa  +++a+ kl+g
  Achn250311 129 KYRGVRQRP-WGKWAAEIRDPVK---KVRLWLGTFDTAEEAAMVYDNAAIKLRG 178
                 8********.**********644...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.78E-34128185No hitNo description
Gene3DG3DSA:3.30.730.108.6E-31129185IPR001471AP2/ERF domain
SMARTSM003803.5E-39129192IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-22129185IPR016177DNA-binding domain
PROSITE profilePS5103223.709129186IPR001471AP2/ERF domain
PfamPF008478.9E-13129178IPR001471AP2/ERF domain
PRINTSPR003675.5E-11130141IPR001471AP2/ERF domain
PRINTSPR003675.5E-11152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDESMSMLWP IKHTEHLNVT KKLTKSSIPR SKQIFGNLKP PELCSGGPRV VRISVTDPDA  60
TDSSSGEDDA FFGRRRVKRY VNEISFETAC KSSLNANQVW KRKVGTGNSL LAKRKPTKSA  120
AARGGGGQKY RGVRQRPWGK WAAEIRDPVK KVRLWLGTFD TAEEAAMVYD NAAIKLRGPH  180
ALTNFITPPL SESPDINVTS VSGYESGDES HTHSLSSPTS VLRFRTHSNE EAKSLKHSKP  240
AQEGSESNEN SPVHEPKPCQ EPVQEDTCFL PDFIPMEMPF LDDLFNFEPP GPIHFDDTPV  300
FADNLLCDDL SGMFTDPIHD FDPSSTWQVD DLFEEIGGDF FTADPLIVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22127185362ATERF1
3gcc_A2e-22127185362ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028097450.11e-117ethylene-responsive transcription factor CRF1-like
TrEMBLA0A2R6RW640.0A0A2R6RW64_ACTCH; Ethylene-responsive transcription factor
STRINGVIT_16s0050g02400.t011e-111(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-63cytokinin response factor 4