PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn249151
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YB
Protein Properties Length: 484aa    MW: 54194 Da    PI: 5.8371
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn249151genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.62.4e-55296389194
       NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                 vreqdr+lPian+srimkk+lPan+ki+kdak+tvqecvsefisfvtseasdkcq+ekrktingddllwa+atlGfedy++plk+yl++yre +
  Achn249151 296 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLARYREGD 389
                 59*****************************************************************************************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF025822.2E-2660230IPR003734Domain of unknown function DUF155
Gene3DG3DSA:1.10.20.108.4E-52293398IPR009072Histone-fold
SuperFamilySSF471133.88E-38299400IPR009072Histone-fold
PfamPF008081.3E-27302366IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.7E-19330348No hitNo description
PROSITE patternPS006850333349IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.7E-19349367No hitNo description
PRINTSPR006151.7E-19368386No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007005Biological Processmitochondrion organization
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MKFWLLSCSV DLRTLVEKNK PNFIPPTSRM TNYVVLRFGD VKSEPNGLGA NISGSDCFYM  60
VVFQYGSIVL FNVHEHAVDG YLKIVEKHAS GLLPEMRKDE YEVREKPTLN TWMQGGLDYI  120
MLQYLNIDGI RTIGSVLGQS IALDYYVRQV DGIVAEFTDI NRGMEKTGTF TMERKKLFQL  180
VGKANSNLAD VILKLGLFER SDIAWKDAKY AQIWEYLRDE FELTQRFASL DFKLKFVEHN  240
IRFLQEILQN RKSDFLEWLI IILIGAEILI SVVPEAMEEA PGSPESGGDQ SPRANVREQD  300
RYLPIANISR IMKKALPANG KIAKDAKDTV QECVSEFISF VTSEASDKCQ KEKRKTINGD  360
DLLWAMATLG FEDYIDPLKA YLARYREGDT KGSARGGDGS SKKDTVGAQL VPNAQPRVRV  420
SRVYDMQLAP CLECLCFLAL KCQPSPFSSN SPHGSFLISS LSNNASSQLL SSCPQCPGTA  480
NDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-42297387393NF-YB
4awl_B1e-42295387294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A1e-42295387294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604653.10.0PREDICTED: sporulation protein RMD1
TrEMBLA0A2R6RS460.0A0A2R6RS46_ACTCH; Sporulation protein
STRINGXP_009604653.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.39e-70nuclear factor Y, subunit B8