PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn248951
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family E2F/DP
Protein Properties Length: 326aa    MW: 35944.3 Da    PI: 6.5208
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn248951genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.91.5e-2773155271
     E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                 ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
  Achn248951  73 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsnsltspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 155
                 689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.1E-1253325IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.107.9E-4768160IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.4E-3572155IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.5E-2574155IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.24E-2175156IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.70E-44160263IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.66E-42161273No hitNo description
SMARTSM011389.3E-66162323IPR014889Transcription factor DP, C-terminal
PfamPF087812.5E-40163268IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGDKNKPSVS KSNTTSTGGS VGSPAATTPP PTLANSRLNH LHLHDDDDDA PSQGAAGIKK  60
KKRGQRAAGG DKSGRGLRQF SMKVCEKVES KGRTTYNEVA DELVAEFADP SNSLTSPDQQ  120
QYDEKNIRRR VYDALNVLMA MDIISKDKKE IQWRGLPQTS LNDIEELKSE RLGLRSRIDK  180
KTAYLQELEE QFVGLQNLIQ RNEQLYSSGN SPIGGVALPF ILVQTRPHAT VEVEISEDMQ  240
LVHFDFNSTP FELHDDNYVL KAMKFCERPQ GDVVAPNLCA DGGEGSSMFQ PQISPPSWSN  300
VPDRDRPLTS PPLPGIIKAR VKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-3766160193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028072876.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-147DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2R6RS640.0A0A2R6RS64_ACTCH; Transcription factor-like protein
STRINGXP_010241817.11e-175(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-131Transcription factor DP