PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn248041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB_related | ||||||||
Protein Properties | Length: 259aa MW: 28884.3 Da PI: 4.4486 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.5 | 3.1e-13 | 22 | 80 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46 +g W++eEde+lv++ + g +W+ Ia+ ++ gRt++++k++w++ Achn248041 22 KGLWSPEEDEKLVKYMVMSSGQgqcwsevarnaglqRWSQIAAQLP-GRTDNEIKNFWNS 80 678***********988888778***********************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.51 | 17 | 86 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 17 | 86 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.42E-11 | 17 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-9 | 21 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-10 | 22 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.11E-10 | 25 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MKKPLPIGKN NNNVTSNSKM RKGLWSPEED EKLVKYMVMS SGQGQCWSEV ARNAGLQRWS 60 QIAAQLPGRT DNEIKNFWNS TIKKRLRNSS SPLTSPNVGD SSLKTRDVTQ GNITMRASNT 120 MAMFMDSSPS SSSTVTRSLP MNYSIDPTVF SASGYFNVPM FMPQVGMGGD VFYGNYNGIL 180 GGNRDLFVPP LECTSMDEEN GDNKNLLDRN INNNIEVESM EGFETCWQEG DDLKVEEWDL 240 EELMSVVSSF PFLDFQSE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028068093.1 | 3e-75 | transcription factor MYB46-like | ||||
TrEMBL | A0A2R6P844 | 1e-175 | A0A2R6P844_ACTCH; Transcription factor like | ||||
STRING | XP_009609673.1 | 3e-57 | (Nicotiana tomentosiformis) | ||||
STRING | PGSC0003DMT400018995 | 3e-57 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 2e-30 | myb domain protein 83 |