PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn247371
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 696aa    MW: 75961.2 Da    PI: 8.2211
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn247371genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-0579101123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C++C+k F r  nL+ H r H
  Achn247371  79 FICEICNKGFQRDQNLQLHRRGH 101
                 89*******************88 PP
2zf-C2H2120.00066156178123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k++  +s+ k H + +
  Achn247371 156 WKCEKCSKRYAVQSDWKAHSKIC 178
                 58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.08E-778101No hitNo description
Gene3DG3DSA:3.30.160.601.9E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.84579101IPR007087Zinc finger, C2H2
SMARTSM003550.02279101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM0035535121151IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4144177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.08E-7151176No hitNo description
SMARTSM00355130156176IPR015880Zinc finger, C2H2-like
CDDcd000098.31E-5497601No hitNo description
Gene3DG3DSA:3.40.50.3003.2E-20533614IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525402.55E-27537682IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF000044.6E-12537601IPR003959ATPase, AAA-type, core
PROSITE patternPS006740572590IPR003960ATPase, AAA-type, conserved site
Gene3DG3DSA:1.10.8.601.2E-20615676No hitNo description
PfamPF014346.2E-6663695IPR000642Peptidase M41
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0003676Molecular Functionnucleic acid binding
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MMMNGVMLDD SMSNLTSASN EASISSSNRN EVIGGGILYP QAPNQPPPPK KKRNLPGNPD  60
PGAEVIALSP KTLMATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR NKEEVVRKKV  120
YVCPEAGCVH NDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKRYAVQSD WKAHSKICGT  180
REYRCDCGTL FSRRDSFITH RAFCDALAEE TTRSSNHLTP NPFFSSQTTP HFSLQNNFPV  240
ALKTEVQDQT HTQSFNQLPP WLAHQPNPVD LPTQLFSPRF ENPNPSPQMS ATALLQKAAQ  300
MGVTMSKNGS STASETVLIR PHQLAHMSSG PASGLGLASC DDMGNGLLFG NIKAGGGGNV  360
SVSSGCMEQV GASMMSGGGG SLPCGSGFDG SSAAASSFEE ALNGMLMNPK MDPFLETTHL  420
RRSNEGNTLL SAQERFQSSY VGSFARRVRD RDGSSDAAYL KEFYHQNDPE AVIRLFESQP  480
LLHSNTSALA EYMTALVKVD RLDESELLKT LQRGVGALIE DRGISKGLGL NERCKPIDAI  540
GGSRNPKDQQ YMKMTLNQLL VELDGFKQNE GIIVIAATNF PESLDNALVR PGRFDLHIVV  600
PNPDVEGRRQ ILESHMSKVL KADDFDMMII GRGTPGFSGA DLANLVNIAA LKAAMDGAKA  660
VSMADLEYAK DKIMMGSELK SAVISDESRR LTAFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6az0_A5e-57537695104262Mitochondrial inner membrane i-AAA protease supercomplex subunit YME1
6az0_B5e-57537695104262Mitochondrial inner membrane i-AAA protease supercomplex subunit YME1
6az0_C5e-57537695104262Mitochondrial inner membrane i-AAA protease supercomplex subunit YME1
6az0_D5e-57537695104262Mitochondrial inner membrane i-AAA protease supercomplex subunit YME1
6az0_E5e-57537695104262Mitochondrial inner membrane i-AAA protease supercomplex subunit YME1
6az0_F5e-57537695104262Mitochondrial inner membrane i-AAA protease supercomplex subunit YME1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107118KQRNKEEVVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028122015.10.0protein indeterminate-domain 7-like
RefseqXP_028122016.10.0protein indeterminate-domain 7-like
TrEMBLA0A2R6Q3140.0A0A2R6Q314_ACTCH; Protein indeterminate-domain like
STRINGcassava4.1_005370m1e-153(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-110indeterminate(ID)-domain 7