PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn246791
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 148aa    MW: 17065 Da    PI: 6.5279
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn246791genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-191970256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                +y+GVr+++ +g+++AeIrd s ng  +r +lg+f+ta +Aa+a+++a+ +++g+
  Achn246791 19 RYRGVRRRP-WGKYAAEIRDTSRNG--ARLWLGTFDTAVDAARAYDRAAFNMRGH 70
                6********.**********55565..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-301979IPR001471AP2/ERF domain
PROSITE profilePS5103223.0111977IPR001471AP2/ERF domain
SMARTSM003807.2E-361983IPR001471AP2/ERF domain
CDDcd000181.08E-161978No hitNo description
PfamPF008477.9E-141970IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-231978IPR016177DNA-binding domain
PRINTSPR003671.2E-102031IPR001471AP2/ERF domain
PRINTSPR003671.2E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDEHHKGKDK QEKGREEVRY RGVRRRPWGK YAAEIRDTSR NGARLWLGTF DTAVDAARAY  60
DRAAFNMRGH FAILNFPNEY YPQLSNSPCP LPSASWGSTL APSEGFDHKV GPSTWQEREV  120
IEFEYLDDKV LEELLESEEE KQKRMKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-31141309114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027364607.14e-54ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC57e-49ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2R6PW091e-106A0A2R6PW09_ACTCH; Ethylene-responsive transcription factor
STRINGPOPTR_0008s16600.12e-52(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-31ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]