PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn246461 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MYB_related | ||||||||
Protein Properties | Length: 197aa MW: 22383.8 Da PI: 4.5336 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.2e-16 | 5 | 54 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 +g+WT eEd++l+ +v+q+G g+W++ ++ gRt++++k+ w++yl Achn246461 5 KGPWTHEEDQILISYVQQYGHGNWRALPKLAArlPGRTDNEIKNLWHTYL 54 79***********************9988888888*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.257 | 1 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.59E-17 | 2 | 61 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-23 | 3 | 55 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-12 | 4 | 56 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 5 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.52E-13 | 7 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MGLKKGPWTH EEDQILISYV QQYGHGNWRA LPKLAARLPG RTDNEIKNLW HTYLKKCLKN 60 YQTVPKYDST SSNESKFTEF DFSTHQGIES PGYAPVSLQD FSSEYSSVTN LTALANTMVV 120 KDEKLEESET LFSRIDAQFW SHELSGEKSN MDSDFLGVKD DGLQFQISLS TIDDSTEFWY 180 DLLTRAGGQL TELLEF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028097718.1 | 2e-61 | transcription factor MYB30-like isoform X2 | ||||
TrEMBL | A0A2R6PW04 | 1e-126 | A0A2R6PW04_ACTCH; Myb-related protein like | ||||
STRING | EOY06040 | 6e-45 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 8e-30 | myb domain protein 15 |