PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn245901
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 305aa    MW: 34079.4 Da    PI: 4.81
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn245901genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.61e-082362682355
                 SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 +yp++ee+ +L++ +gL ++q+ +WF N+R ++
  Achn245901 236 PYPTEEEKMKLSEITGLGQKQINNWFINQRKRH 268
                 8*****************************885 PP
2ELK36.21.3e-12188209122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK++Ll+KYsgyL+sL++EF+
  Achn245901 188 ELKEMLLHKYSGYLSSLRKEFL 209
                 9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.3E-204690IPR005540KNOX1
PfamPF037901.2E-204888IPR005540KNOX1
SMARTSM012561.3E-2393144IPR005541KNOX2
PfamPF037913.9E-2397143IPR005541KNOX2
SMARTSM011882.5E-6188209IPR005539ELK domain
PROSITE profilePS5121310.982188208IPR005539ELK domain
PfamPF037899.0E-9188209IPR005539ELK domain
PROSITE profilePS5007112.115208271IPR001356Homeobox domain
SMARTSM003895.8E-12210275IPR001356Homeobox domain
SuperFamilySSF466898.13E-19210281IPR009057Homeodomain-like
CDDcd000864.22E-14211272No hitNo description
Gene3DG3DSA:1.10.10.602.1E-25213273IPR009057Homeodomain-like
PfamPF059202.1E-16228267IPR008422Homeobox KN domain
PROSITE patternPS000270246269IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0010094Biological Processspecification of carpel identity
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MADCNNDDIS GVGIFPTTRS GIHGTIGDMV RCETAGMEVT GSEMSDLIKA QIANHPLYPN  60
LVSAYIECRK VGAPPEMASL LEEISKENNP ISSRCEIGVD PELDEFMGSY CEVLHKYKEE  120
LSKPFDEATT FLSDIELQLS NLCKETLTMA RNYHSDEEAG TSSEDLSCGE VGAAESRESS  180
GARPGDQELK EMLLHKYSGY LSSLRKEFLK KRKKGKLPRD ARIALLDWWN THYRWPYPTE  240
EEKMKLSEIT GLGQKQINNW FINQRKRHWK PSEDMRFALM EGVSGSIGGP MYFDNPGGTS  300
SVDI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203212LRKEFLKKRK
2209213KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028097641.11e-175homeobox protein knotted-1-like 1
SwissprotQ9FP291e-103KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A2R6R1520.0A0A2R6R152_ACTCH; Homeobox protein knotted-1-like
STRINGVIT_14s0060g01180.t011e-141(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-81KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]