PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn245401
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CO-like
Protein Properties Length: 385aa    MW: 42642.7 Da    PI: 6.6298
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn245401genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.81.6e-061960439
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                r C+++ +     +C++++ +lC+ C   +H        H++
  Achn245401 19 RACDTCRSAACAVYCRTDSAYLCAGCDARIHATnqvassHER 60
                67******99*********************66667777765 PP
2zf-B_box28.92.5e-0961105341
    zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                  ++C+ +e+ ++ + C+ +   lC++C + +H+       H +vp
  Achn245401  61 VWVCEACERAPAAFICKADTASLCASCDSDIHSAnplarrHHRVP 105
                 689*****************************6688999977776 PP
3CCT67.53.7e-23315358144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea++lRY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Achn245401 315 REARVLRYREKKKMRKFEKTIRYASRKAYAETRPRIKGRFAKRT 358
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.8551663IPR000315B-box-type zinc finger
SMARTSM003363.3E-71663IPR000315B-box-type zinc finger
CDDcd000212.06E-61963No hitNo description
PROSITE profilePS5011910.87959106IPR000315B-box-type zinc finger
PfamPF006435.1E-760105IPR000315B-box-type zinc finger
CDDcd000211.02E-762106No hitNo description
SMARTSM003361.0E-864106IPR000315B-box-type zinc finger
PROSITE profilePS5101716.539315357IPR010402CCT domain
PfamPF062033.7E-17315357IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MLKEESSSVL AVGNNNWARA CDTCRSAACA VYCRTDSAYL CAGCDARIHA TNQVASSHER  60
VWVCEACERA PAAFICKADT ASLCASCDSD IHSANPLARR HHRVPVLPIP GCLYGPSATN  120
LGGSLAHPTA NHNDGFLTQE ADQTIDEVDD QDEASSWLLL NPVKNNTNQN GNGFLFGGEV  180
VDEYLHLEEY NSCQEHPFTE QYNHQQQQHG IVPQKSFGGD RVVPVQCGEI KGQLHHQQQH  240
HYQLGIMDYE NPKTGYGYPA SMSHSVSVSS MDVSVVPDST MSDVSISHPR HPKGTIELFS  300
SPPIHMPTQL TPMDREARVL RYREKKKMRK FEKTIRYASR KAYAETRPRI KGRFAKRTEL  360
EGEVDLMFNT TLMAEGGYGI VPSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322328REKKKMR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022759198.10.0zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-135COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A2R6RUB40.0A0A2R6RUB4_ACTCH; Zinc finger protein like
STRINGEOY038911e-179(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15840.11e-115B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]