PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn245331 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 232aa MW: 26747.5 Da PI: 9.1025 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.4 | 2.1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eys+ Achn245331 9 KRIENKVSRQVTFSKRRSGLLKKAHEISVLCDADVALIVFSTNGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 87.9 | 2e-29 | 84 | 160 | 10 | 86 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 +++ + +++ e+ kL +++e Lqr++Rh++GedL++L+l+eLq++eqq++++l++iR++Kn+l++e+i+elqkk Achn245331 84 DTESQPNWSLEHPKLSARVEVLQRNIRHYVGEDLDPLNLRELQHVEQQIDTALRRIRTRKNQLMHESISELQKKYLY 160 4556789******************************************************************9654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.987 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.9E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.03E-34 | 2 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.17E-40 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 3.0E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.3E-24 | 86 | 158 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.758 | 88 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MGRGRVQLKR IENKVSRQVT FSKRRSGLLK KAHEISVLCD ADVALIVFST NGKLFEYSTD 60 SSMERILEKY DRYSYVERQL GAPDTESQPN WSLEHPKLSA RVEVLQRNIR HYVGEDLDPL 120 NLRELQHVEQ QIDTALRRIR TRKNQLMHES ISELQKKYLY RQNTEGNYTN SCHCDCIEKS 180 EPFQHAETVS TEFGYREEAA GMLVKKVLCY PQKGPPTMKL IAVNVAITTV K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ113356 | 0.0 | HQ113356.1 Actinidia chinensis FUL-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018816775.1 | 1e-92 | PREDICTED: truncated transcription factor CAULIFLOWER A-like | ||||
Swissprot | D7SMN6 | 2e-92 | FULL_VITVI; Agamous-like MADS-box protein FUL-L | ||||
TrEMBL | A0A2R6RUF1 | 1e-110 | A0A2R6RUF1_ACTCH; Agamous-like MADS-box protein | ||||
TrEMBL | F4ZKL9 | 1e-110 | F4ZKL9_ACTCH; FUL-like protein | ||||
STRING | VIT_14s0083g01030.t01 | 8e-91 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA499 | 23 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-82 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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