PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn243571 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GRAS | ||||||||
Protein Properties | Length: 500aa MW: 56401.6 Da PI: 4.4982 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 137 | 2e-42 | 141 | 499 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +lL + +a++ ++ ela+ + r+ e +sp g++++Rl +++ + + + + ++s s++ aa+k+f++++P+ k++h+taN a Achn243571 141 HLLKAYGQAMEMEQRELAEVIRRRIMEKVSPVGETLERLGFHLFQSVGMTEEE---------HLLQES---SKNFKAAFKAFYQIFPYGKLAHFTANLA 227 788888999*********************************99877655444.........222333...67788999******************** PP GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.vakrledleleeLrvkp 198 Ileav ++ e++Hi+Dfd+++G+QW++++++ as + +lR+T ++s ++ l e +rL + A++ g++++ + + +++ ++++ ++++ + Achn243571 228 ILEAVPENiETIHIVDFDVGEGVQWAPMIESVASLQ---KTLRLTLIKS----GEDLLGEATRRLYDHARSSGLNMKVEEVgIEDLVSEI--KKMKNRG 317 *****9999************************975...56********....99************************98333334444..4443333 PP GRAS 199 ..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk......vvvvveqeadh...nsesFlerflealeyysalfdsleaklpres.eerikv 285 +E la n+++ l ++ ++ ++s+ +e+L+ k+l ++ ++v+ + +a + + + f l++y al +s+e +++ e+ri + Achn243571 318 grREWLAFNCMVGLPHMR--KGRSRSHVREFLRKAKELLANsennegIIVIGDGDAGErlrSCSGYGSFFEGYLSHYQALCESMEWNVAVSLaEARIAM 414 55***************7..78888889*********9665445555999999997653434456666677789**********999987656****** PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaWr 374 E ++++ i++ + ++ e ++++ ++ e G++ +l++++ +a+ ++r+ + y v ++++++vl W+++pLv vS Wr Achn243571 415 ESLFVAPFISSPFCLRKWE------EVREGSDLYAEIGLNGQRLTKENLVEAQEMVREGE-SLYVVTiggQNNNEMVLEWRGNPLVRVSTWR 499 ***********99999988......566678999************************99.45998888999*******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 22.726 | 113 | 477 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.8E-40 | 141 | 499 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MMQPELLEQL SWPYHNIINS SLDLEFSFSF SNTEDSYSSG ISSDQFLFAD EFVEYLMSGD 60 KFQVTDGDYM EGLEPILGGD QLGDVCRWLR EDESEGSFPS PNQCTEPEDI WSPSQSTKSS 120 EVSLTLPGGD MDIDSHLSLG HLLKAYGQAM EMEQRELAEV IRRRIMEKVS PVGETLERLG 180 FHLFQSVGMT EEEHLLQESS KNFKAAFKAF YQIFPYGKLA HFTANLAILE AVPENIETIH 240 IVDFDVGEGV QWAPMIESVA SLQKTLRLTL IKSGEDLLGE ATRRLYDHAR SSGLNMKVEE 300 VGIEDLVSEI KKMKNRGGRR EWLAFNCMVG LPHMRKGRSR SHVREFLRKA KELLANSENN 360 EGIIVIGDGD AGERLRSCSG YGSFFEGYLS HYQALCESME WNVAVSLAEA RIAMESLFVA 420 PFISSPFCLR KWEEVREGSD LYAEIGLNGQ RLTKENLVEA QEMVREGESL YVVTIGGQNN 480 NEMVLEWRGN PLVRVSTWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-14 | 172 | 400 | 36 | 270 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028077641.1 | 0.0 | nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A2R6QZ35 | 0.0 | A0A2R6QZ35_ACTCH; Nodulation-signaling pathway 2 protein | ||||
STRING | EOY07107 | 1e-161 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5361 | 19 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 2e-20 | GRAS family protein |