PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn243241
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 492aa    MW: 54196 Da    PI: 6.1594
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn243241genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.58.1e-1021004831374
        GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.......sseelaalklfsevsP 89 
                 lv+lL+++Aea++   ++ ela+ +L rl+el+sp++ ++m+Rlaa+fteAL+  l + + +  k +  + +++++       +++++aa++l++++sP
  Achn243241 100 LVHLLMAAAEALTGatKSRELARVILVRLKELVSPHDgTNMERLAAHFTEALQGLLEGAGGGHNKHMLGTGSHHHHhhhddhhQTDVIAAFQLLQDMSP 198
                 68**********86337778************9998779******************9877777766443333333346678899************** PP

        GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                 ++kf+h+taNqaIleav +++rvHi+D+di++G+QW++L+qaL sR++gpp  +lRiT+v++  sg     +++etg+rL+ fA+++g pf+f+    +
  Achn243241 199 YVKFGHFTANQAILEAVTHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPapHLRITAVSRGGSGrrFIGTVQETGRRLTAFAASIGQPFSFHQCKLD 297
                 ***********************************************776555*********8888766789***********************9999 PP

        GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseer 282
                 + e++++++L++ +gEal+ n++l+l ++  +  ++     ++L   k l++++v++ve+e+   +++ F+ +f+++l++ysa++dslea++p + ++r
  Achn243241 298 SDETFRPSALKLVRGEALVFNCMLHLPHFNYRAPESV---ASFLCGAKVLNSRLVTLVEEEVGPtGDGGFMGQFMDSLHHYSAVYDSLEAGFPMQGRAR 393
                 *****************************85555444...49*******************9987********************************** PP

        GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                 + vEr++lg++i  ++a    +r  +++  ++W e+l  aGF+p+++s  + +qaklll  ++ dgyrvee  ++ lvlgWk+r+L+s+S W+
  Achn243241 394 ALVERVFLGPRIFGALARIYLARGDDER--HSWGEWLAVAGFRPLSVSFANHCQAKLLLGLFN-DGYRVEELaNNRLVLGWKSRRLLSASIWT 483
                 *********************9776666..89*******************************.******97588999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.38674463IPR005202Transcription factor GRAS
PfamPF035142.8E-99100483IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MVVDDVLTEL EFSGYSTTST TTTTVTTDDE YGCTWNDWSP VVDWDELSGP HDDFHDLIEL  60
MIDDNSTAAY HHHVGNAEAA AADAPEMGVA AAEDSKGLRL VHLLMAAAEA LTGATKSREL  120
ARVILVRLKE LVSPHDGTNM ERLAAHFTEA LQGLLEGAGG GHNKHMLGTG SHHHHHHHDD  180
HHQTDVIAAF QLLQDMSPYV KFGHFTANQA ILEAVTHDRR VHIVDYDIME GIQWASLMQA  240
LVSRKDGPPA PHLRITAVSR GGSGRRFIGT VQETGRRLTA FAASIGQPFS FHQCKLDSDE  300
TFRPSALKLV RGEALVFNCM LHLPHFNYRA PESVASFLCG AKVLNSRLVT LVEEEVGPTG  360
DGGFMGQFMD SLHHYSAVYD SLEAGFPMQG RARALVERVF LGPRIFGALA RIYLARGDDE  420
RHSWGEWLAV AGFRPLSVSF ANHCQAKLLL GLFNDGYRVE ELANNRLVLG WKSRRLLSAS  480
IWTSPDCDFF N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-549348311378Protein SCARECROW
5b3h_D1e-549348311378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007019002.20.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2R6RP480.0A0A2R6RP48_ACTCH; Nodulation-signaling pathway 2 protein
STRINGEOY162270.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122411923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-163GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]