PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn243051
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 476aa    MW: 53583.1 Da    PI: 6.9775
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn243051genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.78.7e-201055247
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                r e + nrq t+skR+ng+ KKA+ELSvLCd++  +++fs+++k  
  Achn243051 10 RLETSANRQATYSKRKNGLVKKANELSVLCDIDLFLVLFSPSNKTV 55
                778999***********************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.268161IPR002100Transcription factor, MADS-box
SMARTSM004325.7E-24160IPR002100Transcription factor, MADS-box
CDDcd001208.06E-21257No hitNo description
SuperFamilySSF554551.09E-22282IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-17323IPR002100Transcription factor, MADS-box
PfamPF003196.6E-191257IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MGRVKLKVER LETSANRQAT YSKRKNGLVK KANELSVLCD IDLFLVLFSP SNKTVVWTGR  60
NGTFERTIAR LAELTPQERA LKRTYKKSDH NVNGQDFFAA RDWNNMHKTD SMEVLEPMED  120
HMRKLIDEIH AQKEIVGSQQ HSVPGCHYQV QNEACPPFNL CAEQQVHTNH IVQVLNQVTP  180
FNLGAAHHVH TNYVMQVQNQ VAPFNLSTEQ HVHTNHIVQV QNQMCQPYNL GDEQQVQHSS  240
WVNIDNSQRM VSLAEKNMLP QRGTELSAGS YSFSGSFGAI LAGTVSTWHE SSILSEILRT  300
QSLRNELMGL RAETLRNELI NTNCLNNDLI TESLKLMKPG YLTNQLTNHD GFMNELVRAE  360
SLRNEGIQSR TATNELWYTF TSFSETTFQP PQQMNVKPSV DNFCADGNFA SPQPGFPDHS  420
TWASTSGGYD PNHRNGASTS GATFNGHLST QASLFSICIY FFLFMALLYR GSCHI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028121592.11e-51uncharacterized protein LOC114318832 isoform X1
RefseqXP_028121593.19e-52uncharacterized protein LOC114318832 isoform X2
RefseqXP_028121595.15e-52agamous-like MADS-box protein AGL30 isoform X4
TrEMBLA0A2R6R9150.0A0A2R6R915_ACTCH; Agamous-like MADS-box protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76402124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.18e-38AGAMOUS-like 65