PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn242741
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 141aa    MW: 15748.8 Da    PI: 8.2134
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn242741genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.91.1e-2034119190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 ++Y++YAk  GF  ++++skk+ ++g     +++C ++gk++++  +     +++++++++Cka+++++++ dgkw+++++el+HnHel 
  Achn242741  34 EYYSTYAKAKGFGSVVKASKKR-DDGVKAYINYTCHRSGKPRTTALN---PVKSHPTSKVDCKAHMNISLQVDGKWMLNSIELNHNHELD 119
                 69**********9999988876.89999999************9988...9999**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.4E-1834119IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MEIEDMDLEE NMNVDAVLEP KVGTIFNSEN EAKEYYSTYA KAKGFGSVVK ASKKRDDGVK  60
AYINYTCHRS GKPRTTALNP VKSHPTSKVD CKAHMNISLQ VDGKWMLNSI ELNHNHELDQ  120
KKEKYLKVLS DSPTTIAKGN *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6S1M22e-96A0A2R6S1M2_ACTCH; Protein FAR1-RELATED SEQUENCE like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1740224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-14far-red elongated hypocotyls 3