PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn241351 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 492aa MW: 53439.9 Da PI: 6.0826 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39 | 2.1e-12 | 219 | 266 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +r++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Achn241351 219 SIRRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 266 589***********988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 16.674 | 213 | 274 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-7 | 219 | 266 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.92E-21 | 220 | 274 | No hit | No description |
SMART | SM00380 | 7.0E-27 | 220 | 280 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.23E-15 | 222 | 275 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-15 | 222 | 274 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 492 aa Download sequence Send to blast |
MLGFGGSFIA FNEKKRVPIN QVEWNLMNAH GGEVPKVADF LGVSSKSESN QSDLVPYNEI 60 QGNETDYLFS SNNALVPLPL HNTLGIGTPS NYELQENPTT LQSLTLSMGS GKGSTSETGV 120 ENSNVSNSTI EATPRRTLDT FGQRTSIYRG VTSSENNDKT KPKFCDLSAG IDGQVGMKLI 180 CGITVVEGKG NQGKVAKVSN YEKEVEEMKN MTRQEFVASI RRHHQHGRWQ ARIGRVAGNK 240 DLYLGTFSTE EEAAEAYDIA AIKFRGLNAV TNFDMNRYDV KAILESNTLP IGGGAAKRLK 300 EAQAIECSQK REEMIALGGS GSFDYGSRSS GTFQGYPNFL HHPTASDPQF HQPQPLLALQ 360 NSEISHYQND PQFHQNYLQT QLQLHQQSGS YMHHSNPSSQ FYNSYLQNNP VLLHGLMNMG 420 SSSSSSVVEN SGGYGGYVGS STVTNAGGSG HEELAMVKVD YDNMTSGGYG SWSGDSSVQG 480 SHAGVFSMWN E* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028052844.1 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 1e-136 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A2R6PFP6 | 0.0 | A0A2R6PFP6_ACTCH; AP2-like ethylene-responsive transcription factor | ||||
STRING | EOY32584 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2246 | 24 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51190.1 | 1e-121 | AP2 family protein |