PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn240631
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CO-like
Protein Properties Length: 362aa    MW: 39388.7 Da    PI: 7.1327
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn240631genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.9e-072362437
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                + C+++++  + lfC+ ++ +lC  C  + H+       H
  Achn240631 23 KPCDLCKSAVALLFCRVDSAFLCMGCDAKVHRVgnrharH 62
                67****************************8335553345 PP
2CCT65.12e-22286330145
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                 Rea++lRY+eKrk+RkFeK+irY sRKa+Ae+R R+KGrF+k++e
  Achn240631 286 REARVLRYREKRKNRKFEKTIRYVSRKAYAETRTRIKGRFAKRSE 330
                 9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.112058IPR000315B-box-type zinc finger
PROSITE profilePS501199.2432064IPR000315B-box-type zinc finger
PfamPF006431.1E-62363IPR000315B-box-type zinc finger
CDDcd000219.01E-82466No hitNo description
SMARTSM003367.1E-1063110IPR000315B-box-type zinc finger
CDDcd000217.16E-766110No hitNo description
PROSITE profilePS5101715.864286328IPR010402CCT domain
PfamPF062032.1E-16286328IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGMGEGGGGG GKCYPAGWGI AAKPCDLCKS AVALLFCRVD SAFLCMGCDA KVHRVGNRHA  60
RHERVWKCEV CVQAPASVTC KADAAALCVA FDRDIHSANP LASRHERVPV APFFDSAESV  120
VKSAATAATF LVVADETVPD TKTIPPSWVI PDPTVETLVD PPEMKSNDFL FSDSDQLLDF  180
DYPISIPNSG TDIVVPVQPV KSQQPITQEM MNHTSENYME IDFIAPKLNY AAQSLSHSFS  240
SSSMDVGVVP DGSSVSEISY PFAQTGHSSV GFYGSVNKTQ CQGKDREARV LRYREKRKNR  300
KFEKTIRYVS RKAYAETRTR IKGRFAKRSE IEPESMDRIV ASGSYVCMVE AAGYGVVPSF  360
L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028086202.11e-128zinc finger protein CONSTANS-LIKE 5-like
SwissprotQ9FHH81e-100COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A2R6QHY70.0A0A2R6QHY7_ACTCH; Zinc finger protein like
STRINGVIT_11s0052g01800.t011e-121(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10352376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-74CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]