PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn240471
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 325aa    MW: 35703.8 Da    PI: 7.1191
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn240471genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.6e-17132182155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+ykGVr +k +g+Wv+eIr p++   r r++lg++ +a++Aa+a +aa  +l+g
  Achn240471 132 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYNSAKKAARAFDAALFCLRG 182
                 89*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-20132191IPR016177DNA-binding domain
PfamPF008472.5E-10132182IPR001471AP2/ERF domain
CDDcd000182.47E-28132192No hitNo description
Gene3DG3DSA:3.30.730.101.5E-28133191IPR001471AP2/ERF domain
PROSITE profilePS5103221.456133190IPR001471AP2/ERF domain
SMARTSM003801.7E-32133196IPR001471AP2/ERF domain
PRINTSPR003672.7E-8134145IPR001471AP2/ERF domain
PRINTSPR003672.7E-8156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGSSWFRFAL FLLMARMASS AEVSHDGRAR TIDGVHTQHN LFPSFHFILP VTIPHHSHHQ  60
NLSPPTSTIG ACAANSPLHP TLFLSTQTQH NQIPLSKFSI DKSFWFREFG NKQGMVKPET  120
SNQAERSTTD ESKYKGVRKR KWGKWVSEIR LPNSRERIWL GSYNSAKKAA RAFDAALFCL  180
RGPSAKFNFP ENPPEIAGGR ALTPAEIQVA AARFANSEPG TSRSRRSSSS SSSSSSSTMH  240
VVESPSPSVS DGVAPMGTET PLDGSLLDLF ATMGSENTGP GSFDIFPEFD DFSNEFFVPP  300
LPNVDYGEEN CDGNFSQDSF LWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-14122190272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134140KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028121981.11e-101ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC23e-53ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2R6Q5941e-150A0A2R6Q594_ACTCH; Ethylene-responsive transcription factor
STRINGXP_010099089.16e-77(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.17e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]