PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn239951 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | B3 | ||||||||
Protein Properties | Length: 242aa MW: 27585.5 Da PI: 4.1473 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.2 | 2.2e-11 | 59 | 139 | 22 | 99 |
H.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 22 faeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 ae++ ++++e++ +++ d +g +W++k++y +++s++yvl+ ++ +Fv+ +gLk+gD ++++ ++ +++++v++++++ Achn239951 59 SAEAYlpALVEKEGFFISMDDMNGlHVWSFKFRYwpNNTSRMYVLE-NTGDFVNTHGLKQGDYMMLY--QDyQNQNYVIRARKA 139 344458888899999******99999******9988899999**99.********************..666888888888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 4.8E-4 | 35 | 140 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.80E-13 | 58 | 138 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-16 | 58 | 151 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-12 | 59 | 139 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.1E-8 | 62 | 139 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MGKNEGRSLV AGGACFGKAR GDRVRKTREC DDGESDRTEL TPDLLNHILI LRATQFQKSA 60 EAYLPALVEK EGFFISMDDM NGLHVWSFKF RYWPNNTSRM YVLENTGDFV NTHGLKQGDY 120 MMLYQDYQNQ NYVIRARKAS EQDSYTDSAV ESYVPDEFEV NDSDQVIPMN FSAMDGTEMP 180 FVYETTFSSD SETSYVYETT FSNDSIFDFW SGPMTYSSKV EPIGSFESIE NLSLEELLLS 240 F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 1e-39 | 57 | 143 | 24 | 110 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 1e-39 | 57 | 143 | 24 | 110 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028118286.1 | 4e-96 | B3 domain-containing transcription factor FUS3-like | ||||
TrEMBL | A0A2R6R0T3 | 1e-145 | A0A2R6R0T3_ACTCH; B3 domain-containing transcription factor | ||||
STRING | EOY02917 | 1e-57 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8045 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26790.1 | 1e-40 | B3 family protein |