PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn239261
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 535aa    MW: 58137.9 Da    PI: 5.081
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn239261genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS461.45.2e-1411655281374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAeav++g+ +la+al++++  la +++ +m+++a+yf+eALa+r+++        + p+e+++++ s+ l +   f+e++P+lkf+h+taN
  Achn239261 165 LVHTLMACAEAVQQGNIKLADALVKHIGLLAVSQAGAMRKVATYFAEALARRIYK--------IYPQESNDTSYSDLLEM--HFYETCPYLKFAHFTAN 253
                 689****************************************************........56788876666776665..5**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp lR+Tg+g+p+++++++l+++g++La++Ae++gv+fef+ +va++l+dl+   L+++p
  Achn239261 254 QAILEAFAGATRVHVIDFSLKQGMQWPALMQALALRPGGPPALRLTGIGPPQPDNTDALQQVGWKLAQLAEAIGVEFEFRGFVANSLADLDAAILDIRP 352
                 *************************************************************************************************** PP

        GRAS 199 ..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgrei 294
                    Ea+aVn+v++lhrll+++ ++++    vL  +k ++Pk+v+vveqea+hn++ ++erf eal+yys++fdsl +++l + s+++ ++++++lgr+i
  Achn239261 353 saAEAVAVNSVFELHRLLARPCAIDK----VLASIKAMRPKIVTVVEQEANHNGSGLVERFNEALHYYSTMFDSLeSSGLTQVSNQDLVMSEVYLGRQI 447
                 99****************88888888....*********************************************888899999*************** PP

        GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +nvvaceg++r+erhetl++Wr r+++aGF p++l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  Achn239261 448 CNVVACEGTDRVERHETLSQWRTRMGSAGFDPAHLGSNAFKQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWQ 528
                 ********************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120412.8E-3437100IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.7E-3237107No hitNo description
PROSITE profilePS5098568.437139507IPR005202Transcription factor GRAS
PfamPF035141.8E-138165528IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MKRDRDRDKA ESSSMAATAA EKGKMWTAEQ ADVGGMDELL AVLGYKVKAS DMLEVAQKLE  60
QLEMVMEDDG ISHLSSDTVH YNPSDLSGWV QSMLSELNDN SEYDLSAIPG GAICKQNESS  120
AENEKKRRKT NGNRSGEADS AEVCGGKTAA RPVVLVDSQE TGVRLVHTLM ACAEAVQQGN  180
IKLADALVKH IGLLAVSQAG AMRKVATYFA EALARRIYKI YPQESNDTSY SDLLEMHFYE  240
TCPYLKFAHF TANQAILEAF AGATRVHVID FSLKQGMQWP ALMQALALRP GGPPALRLTG  300
IGPPQPDNTD ALQQVGWKLA QLAEAIGVEF EFRGFVANSL ADLDAAILDI RPSAAEAVAV  360
NSVFELHRLL ARPCAIDKVL ASIKAMRPKI VTVVEQEANH NGSGLVERFN EALHYYSTMF  420
DSLESSGLTQ VSNQDLVMSE VYLGRQICNV VACEGTDRVE RHETLSQWRT RMGSAGFDPA  480
HLGSNAFKQA SMLLALFAGG DGYRVEENDG CLMLGWHTRP LIATSAWQLT ATAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6516052714378Protein SCARECROW
5b3h_A2e-6516052713377Protein SCARECROW
5b3h_D2e-6516052713377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124128KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5886550.0KF588655.1 Actinidia deliciosa GA repressor DELLA (RGL2b) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027074537.10.0DELLA protein GAI-like
RefseqXP_027078270.10.0DELLA protein GAI-like
RefseqXP_027178624.10.0DELLA protein GAI-like
SwissprotQ7Y1B60.0GAI_SOLLC; DELLA protein GAI
TrEMBLA0A2R6S3170.0A0A2R6S317_ACTCH; DELLA protein like
STRINGPOPTR_0005s14540.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]