PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn236811
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 289aa    MW: 32398.1 Da    PI: 6.9187
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn236811genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.43e-33134192159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK vk+s+fprsYYrCt+a C vkk+vers +d ++v++tYeg+H+h+
  Achn236811 134 LDDGYRWRKYGQKAVKNSPFPRSYYRCTTAACGVKKRVERSFDDSSIVVTTYEGTHTHP 192
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-34119194IPR003657WRKY domain
SuperFamilySSF1182903.01E-29126194IPR003657WRKY domain
PROSITE profilePS5081131.169129194IPR003657WRKY domain
SMARTSM007747.5E-39134193IPR003657WRKY domain
PfamPF031061.0E-26135192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDKRELELKN EFSDMFDVPY CEGERGSSGF MDMLDFQDYG PSLLDLIQTP GPQTLPSPTS  60
EVVNTPATTP NSPSISSSST EPANDGRSKR EGGEEEEERD QEKLKKQLKP KKKNTKRQRE  120
PRFAFMTKSE VDHLDDGYRW RKYGQKAVKN SPFPRSYYRC TTAACGVKKR VERSFDDSSI  180
VVTTYEGTHT HPCPVTSRGS IGINMKPEAA AFGSGGTSSF VISQPQQQSY FPNPTPNLSF  240
STTTNPSLPS FFQERRFCPS PSPLIRDHGL LQDMIVPSSK EWKEPKEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-27124195778Probable WRKY transcription factor 4
2lex_A1e-27124195778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109764.11e-103probable WRKY transcription factor 48
SwissprotO229007e-51WRK23_ARATH; WRKY transcription factor 23
SwissprotQ9FGZ42e-50WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLA0A2R6Q3V00.0A0A2R6Q3V0_ACTCH; WRKY transcription factor
STRINGVIT_05s0077g00730.t017e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.16e-48WRKY DNA-binding protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]