PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn235741

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

SBP

Protein Properties

Length: 856aa MW: 94851.3 Da PI: 6.7576

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn235741	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129	1.7e-40	73	150	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adl++ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Achn235741 73 VCQVEDCPADLTTAKDYHRRHKVCDMHSKASKALVGKVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 150 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.3E-31	68	135	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.693	71	148	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.75E-37	72	153	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.9E-29	74	147	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	9.02E-9	574	732	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.6E-6	638	736	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	8.76E-9	639	728	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence Send to blast
MNLENDKGKR ELEKRRRVVV VEDQYLNDVA AGSLNFKLGG QVYPIIQTEM EKWEEGKSGK 60 KSKVVASTSH HAVCQVEDCP ADLTTAKDYH RRHKVCDMHS KASKALVGKV MQRFCQQCSR 120 FHVLQEFDEG KRSCRRRLAG HNRRRRKTHP ESVVNGGSLN DERGSSYVLM DDCIDIQDPP 180 RPIGLCSTVS AFEWTEMRTS TVNACGGNLQ TPPTNPCTAK GSNPATASRP GAAVGRMKLN 240 DIDLNNIYDD TQDCAENMEN CGAPLNLGTG SLDHTTRGHQ DCLNSSLPQT SGNSGSTSSQ 300 SPSTSSGEAQ DLYSDLLFLT NSQCRMDLIV FKLFGKDPSD FPLVLRRQIL DWLSHSPSDI 360 ESYIRPGCII LTIYLRLGKS TWEEVFFIRF IAVTFLYRLS VISNPASCQV VLETSLPLTS 420 HKNCKILSIK PIAVSVSDSA QFLVKGFNLS RPTTRLLCAL EGKYLMQESC SDVTEGGDTF 480 IDQDAIQCLR FSCSIPNLTG RGFIEVEDHD LSGSFFPFIV TEPDVCSEIC MLESAIEVAE 540 IADDVQPESE QIKARNSALD FINEMGWLLH RSQVKCRLDP TNPDLNLFPF ERFSWLMEFS 600 VEHNWCAVVK KLLGILFNGS VDSGEHPSVE LALLEMCLLH RAVRRNCISM VEFLLRYIPD 660 GASNFLFNSD AIGAGGLTPL HIAASRDASE SVLDALTNDP GLVGIKAWKG ACDSAGLTPN 720 DYACLRGYYS YSRLVQKKID QKLGNGHVLL DIPCALLQCG NIKQKPVAEV ANFHTEKTGM 780 KPIQQQHCRL CEQKMLSYGS SNTTRTSVAI YRPAMLSMVA IAAVCVCVAL LFKSSPEVLY 840 IFRPFRWELL KYGPS*

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence Send to blast

MNLENDKGKR ELEKRRRVVV VEDQYLNDVA AGSLNFKLGG QVYPIIQTEM EKWEEGKSGK  60
KSKVVASTSH HAVCQVEDCP ADLTTAKDYH RRHKVCDMHS KASKALVGKV MQRFCQQCSR  120
FHVLQEFDEG KRSCRRRLAG HNRRRRKTHP ESVVNGGSLN DERGSSYVLM DDCIDIQDPP  180
RPIGLCSTVS AFEWTEMRTS TVNACGGNLQ TPPTNPCTAK GSNPATASRP GAAVGRMKLN  240
DIDLNNIYDD TQDCAENMEN CGAPLNLGTG SLDHTTRGHQ DCLNSSLPQT SGNSGSTSSQ  300
SPSTSSGEAQ DLYSDLLFLT NSQCRMDLIV FKLFGKDPSD FPLVLRRQIL DWLSHSPSDI  360
ESYIRPGCII LTIYLRLGKS TWEEVFFIRF IAVTFLYRLS VISNPASCQV VLETSLPLTS  420
HKNCKILSIK PIAVSVSDSA QFLVKGFNLS RPTTRLLCAL EGKYLMQESC SDVTEGGDTF  480
IDQDAIQCLR FSCSIPNLTG RGFIEVEDHD LSGSFFPFIV TEPDVCSEIC MLESAIEVAE  540
IADDVQPESE QIKARNSALD FINEMGWLLH RSQVKCRLDP TNPDLNLFPF ERFSWLMEFS  600
VEHNWCAVVK KLLGILFNGS VDSGEHPSVE LALLEMCLLH RAVRRNCISM VEFLLRYIPD  660
GASNFLFNSD AIGAGGLTPL HIAASRDASE SVLDALTNDP GLVGIKAWKG ACDSAGLTPN  720
DYACLRGYYS YSRLVQKKID QKLGNGHVLL DIPCALLQCG NIKQKPVAEV ANFHTEKTGM  780
KPIQQQHCRL CEQKMLSYGS SNTTRTSVAI YRPAMLSMVA IAAVCVCVAL LFKSSPEVLY  840
IFRPFRWELL KYGPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	9e-30	73	147	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	17	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008390368.1	0.0	squamosa promoter-binding-like protein 1 isoform X3
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A2R6Q3W4	0.0	A0A2R6Q3W4_ACTCH; Squamosa promoter-binding-like protein
STRING	XP_009353416.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-165	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]