PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn235261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 325aa MW: 36333.8 Da PI: 8.3943 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.2 | 3.9e-33 | 111 | 166 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrYkeClkNhAas+Ggh+vDGCgEfmp ge+gt++ l+CaAC+CHRnFHRreve Achn235261 111 VVRYKECLKNHAASIGGHVVDGCGEFMPG-GEDGTPEVLRCAACDCHRNFHRREVEG 166 689*************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-23 | 110 | 167 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.3E-31 | 112 | 164 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.4E-31 | 113 | 164 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.997 | 114 | 163 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.62E-19 | 257 | 321 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.4E-26 | 260 | 317 | IPR006455 | Homeodomain, ZF-HD class |
Gene3D | G3DSA:1.10.10.60 | 1.3E-28 | 260 | 322 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MEIRGQEKDL GMSIGYSTSN LSHQPNQDSS SKMFAASMAA DRRRNETLDH HYRNQQMDLK 60 QMQQQQTHIA ARNQSPDLDP DPATIASIAI GTTSNSKTPQ PEPPESTLAG VVRYKECLKN 120 HAASIGGHVV DGCGEFMPGG EDGTPEVLRC AACDCHRNFH RREVEGEPHP VPSSYYHYNH 180 SRNNSHRATT QLVPAPLPPP PPPHHPNPHR YSSHGPIPPV MMSFGGASGG PAESSSEDLN 240 MFHVSIGAQV MGQPPFFPLR KRFRTKFTPG QKDKMQEFAE RLEWKMQKQD EQQVEQFCAE 300 VGVKRQVFKV WMHNNKQAMK KKQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-22 | 261 | 318 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016490986.1 | 1e-103 | PREDICTED: zinc-finger homeodomain protein 6-like | ||||
TrEMBL | A0A2R6R5X8 | 0.0 | A0A2R6R5X8_ACTCH; Zinc-finger homeodomain protein | ||||
STRING | XP_009804697.1 | 1e-102 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 1e-61 | homeobox protein 24 |