PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn235111
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 347aa    MW: 38995.9 Da    PI: 7.7386
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn235111genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073214236123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC+ C k+F++   L  H  +H
  Achn235111 214 YKCETCFKVFKSYQALGGHRASH 236
                 9************9999998887 PP
2zf-C2H211.50.00093268290123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp C ++Fs+   L  H r+H
  Achn235111 268 HECPVCFRVFSSGQALGGHKRSH 290
                 79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.6E-5426IPR007087Zinc finger, C2H2
PROSITE profilePS501579.224426IPR007087Zinc finger, C2H2
SMARTSM003550.11426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.86E-8214236No hitNo description
PROSITE profilePS5015711.074214241IPR007087Zinc finger, C2H2
PfamPF139122.5E-9214238IPR007087Zinc finger, C2H2
SMARTSM003550.14214236IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
SuperFamilySSF576671.86E-8263290No hitNo description
PfamPF139124.4E-11268290IPR007087Zinc finger, C2H2
SMARTSM003550.19268290IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224268290IPR007087Zinc finger, C2H2
PROSITE patternPS000280270290IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEKHKCKLCF KRFVNGRALG GHMRSHLMNL YAPPKAEQKQ PSGLGEEAES SQSSSSSSSE  60
EEENELKKGL MLCYGLRENP KKSVRLEDPG FNLAVDAGSL ILQDRESETE SSKKQTRRRS  120
KRVRKLGISQ KFQDQKQQFL KKPKLGKTES CWVDPEPVSS ISDASPEEDV AYCLMMLSRD  180
KWMREKEEEE EDPQTEDDEF RELKPIKPRP RPKYKCETCF KVFKSYQALG GHRASHKKTQ  240
PNNNGNPTMA SQSEPEIRNV GVSEEKIHEC PVCFRVFSSG QALGGHKRSH VLNGSNATSF  300
SHSKPPLKSG ETLIDLNLPA PIDDDEISQI ELSAVSDAEF VNPVKQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278670.11e-124PREDICTED: zinc finger protein ZAT4
TrEMBLA0A2R6S1190.0A0A2R6S119_ACTCH; Zinc finger protein
STRINGVIT_15s0021g02720.t011e-124(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-45C2H2-like zinc finger protein