PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn234911

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

GRAS

Protein Properties

Length: 692aa MW: 75026.3 Da PI: 6.5387

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn234911	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	336.5	4.6e-103	342	690	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l+++L+++Ae +++g+ a+ +Larl+++ sp g+p++R+a++f+eAL+ l+ +++++s++n + ++ a+k fse sP+l+f+++t+N Achn234911 342 LIDQLFKAAELIQTGNSVHAHGILARLNHQLSPIGKPFHRAAFFFKEALQVILHP---------TSQHSSPYNLILKIGAYKSFSEFSPLLQFANFTCN 431 5789************************************************9.........677788899********************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 qa+le v+g +r+Hi+Dfdi++G+QW++L+q+La R +g+p l+iT+++sp+++++ el t+e+L +fA+e++vpfef+++ + +l++L +++ Achn234911 432 QALLEIVDGFDRIHIVDFDIGYGGQWASLMQELALRGGGAPALKITAFASPSTHDQLELGLTRENLIHFAAEINVPFEFEIV-----SLDSLQSLPLHE 525 *****************************************************************************7.....444569999* PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 +E++aVnl + ++ + +++l+ vL++vk+lsPk+vv v++ +d+++ +F +++++al+ ++ l++sl+a + e+ +k+E++l+++ i+++ Achn234911 526 NESVAVNLPVGSFSNH--QLPLPL----VLRFVKQLSPKIVVSVDRGCDRTDLPFPNHVIHALQSFTNLLESLDAV-NVNLEALQKMEKFLIQPGIEKI 617 *******9666554..566666....*****************************************665.4566999*********** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 v+ + ++ e+ +Wr+ + ++GF+p+++s++a++qa+ ++++++++g++ve+++ slvl+W++++L+s+SaWr Achn234911 618 VMGRYRS----PEKIPHWRNLFLSSGFSPLTFSNFAESQADFVVKRTPVRGFHVEKRQSSLVLCWQQKELISASAWR 690 9999....****************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.524	316	670	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-100	342	690	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MMTLTLLLSL VKLVSPSPPT STLSSSLGGG GGSADTAGVA AVSGNSNVGV ESRCGSSELR 60 QVPPPAQEVG SGSAAAGAEK CGLGMEDWES ILSDSAAASP GQEQSVLRWI MGDVEDPSMG 120 LNRLLQSDGG GGPPAVDFEF HGGFGSGGGV VDQGFGLDPV ASGGGNLMGP INSSLPIPGF 180 SHTTNKFSHE KLNLAPNPSN PQNYKLPNPP NPMFSPLSNN FLPISLSPSA FNHPQPPLES 240 TETKPQIFNP LMLINNHQAQ PPQNPSFFLP FPYPQQYPHL ILPPPAKRHN AGGIEPVSKG 300 QFSDSMLQHQ QHDTLSHHLH LLPYLQQRPK MVGDEMGQNQ VLIDQLFKAA ELIQTGNSVH 360 AHGILARLNH QLSPIGKPFH RAAFFFKEAL QVILHPTSQH SSPYNLILKI GAYKSFSEFS 420 PLLQFANFTC NQALLEIVDG FDRIHIVDFD IGYGGQWASL MQELALRGGG APALKITAFA 480 SPSTHDQLEL GLTRENLIHF AAEINVPFEF EIVSLDSLQS LPLHENESVA VNLPVGSFSN 540 HQLPLPLVLR FVKQLSPKIV VSVDRGCDRT DLPFPNHVIH ALQSFTNLLE SLDAVNVNLE 600 ALQKMEKFLI QPGIEKIVMG RYRSPEKIPH WRNLFLSSGF SPLTFSNFAE SQADFVVKRT 660 PVRGFHVEKR QSSLVLCWQQ KELISASAWR C*

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MMTLTLLLSL VKLVSPSPPT STLSSSLGGG GGSADTAGVA AVSGNSNVGV ESRCGSSELR  60
QVPPPAQEVG SGSAAAGAEK CGLGMEDWES ILSDSAAASP GQEQSVLRWI MGDVEDPSMG  120
LNRLLQSDGG GGPPAVDFEF HGGFGSGGGV VDQGFGLDPV ASGGGNLMGP INSSLPIPGF  180
SHTTNKFSHE KLNLAPNPSN PQNYKLPNPP NPMFSPLSNN FLPISLSPSA FNHPQPPLES  240
TETKPQIFNP LMLINNHQAQ PPQNPSFFLP FPYPQQYPHL ILPPPAKRHN AGGIEPVSKG  300
QFSDSMLQHQ QHDTLSHHLH LLPYLQQRPK MVGDEMGQNQ VLIDQLFKAA ELIQTGNSVH  360
AHGILARLNH QLSPIGKPFH RAAFFFKEAL QVILHPTSQH SSPYNLILKI GAYKSFSEFS  420
PLLQFANFTC NQALLEIVDG FDRIHIVDFD IGYGGQWASL MQELALRGGG APALKITAFA  480
SPSTHDQLEL GLTRENLIHF AAEINVPFEF EIVSLDSLQS LPLHENESVA VNLPVGSFSN  540
HQLPLPLVLR FVKQLSPKIV VSVDRGCDRT DLPFPNHVIH ALQSFTNLLE SLDAVNVNLE  600
ALQKMEKFLI QPGIEKIVMG RYRSPEKIPH WRNLFLSSGF SPLTFSNFAE SQADFVVKRT  660
PVRGFHVEKR QSSLVLCWQQ KELISASAWR C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-30	361	690	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028112831.1	0.0	scarecrow-like protein 6
Swissprot	O81316	1e-145	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A2R6S115	0.0	A0A2R6S115_ACTCH; Scarecrow-like protein
STRING	VIT_15s0048g00270.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6253	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-146	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]