PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn233741
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 233aa    MW: 25065 Da    PI: 5.6523
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn233741genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.3e-1967117155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr++  +g+Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +l+g
  Achn233741  67 PVYRGVRRRN-SGKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAAIALRG 117
                 68*****888.8******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-1467117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-3268127IPR001471AP2/ERF domain
PROSITE profilePS5103222.68268125IPR001471AP2/ERF domain
SMARTSM003801.9E-3068131IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2168126IPR016177DNA-binding domain
PRINTSPR003673.2E-96980IPR001471AP2/ERF domain
CDDcd000183.44E-3169127No hitNo description
PRINTSPR003673.2E-991107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MDVFSHFSDP IHGGTAYLYG DLPESSSPAS IGSARPVNWS DEDGVMLASR HPKKRAGRKK  60
FRETRHPVYR GVRRRNSGKW VCEVREPNKK SRIWLGTFPT AEMAARAHDV AAIALRGRTA  120
CLNFADSGWR LPVPASSDPK DIQKAAAEAA EAFRPSESEV EVNSGGGGAG PETVDESPEG  180
MFFMDDEAVF GMPGLLTNMA EGLMLPPPHS VGGGRDDDGE FGADVSLWSY SI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-14661241271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5347271e-108KF534727.1 Actinidia chinensis C-repeat binding factor 2 (CBF2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023916189.11e-104dehydration-responsive element-binding protein 1B-like
RefseqXP_023916190.11e-104dehydration-responsive element-binding protein 1B-like
RefseqXP_023916191.11e-104dehydration-responsive element-binding protein 1B-like
RefseqXP_023916192.11e-104dehydration-responsive element-binding protein 1B-like
RefseqXP_023916193.11e-104dehydration-responsive element-binding protein 1B-like
RefseqXP_023916194.11e-104dehydration-responsive element-binding protein 1B-like
RefseqXP_023916195.11e-104dehydration-responsive element-binding protein 1B-like
RefseqXP_023916196.11e-104dehydration-responsive element-binding protein 1B-like
RefseqXP_023916197.11e-104dehydration-responsive element-binding protein 1B-like
RefseqXP_023916199.11e-104dehydration-responsive element-binding protein 1B-like
SwissprotQ9FJ936e-80DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A499SBW51e-168A0A499SBW5_ACTDE; C-repeat binding factor 1
STRINGPOPTR_0012s13870.12e-98(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.14e-76C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]