PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn233451 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | G2-like | ||||||||
Protein Properties | Length: 403aa MW: 44989.7 Da PI: 7.7128 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.4 | 1.4e-32 | 257 | 312 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs+ AtPk+i++lm+v+gLt+++vkSHLQkYRl+ Achn233451 257 KQRRCWSPELHRRFVNALQQLGGSQAATPKQIRDLMQVDGLTNDEVKSHLQKYRLH 312 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.207 | 254 | 314 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.34E-17 | 255 | 315 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-29 | 255 | 315 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.0E-27 | 257 | 312 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 259 | 310 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MGSIPHELRL DVRPTFIPKT ISEFLGELTE IGSASEKLMR LNDFVKRLED EMRKIDAFKR 60 ELPLCMILLN DAIVTLKEES TECRARNVEP VLEKFIPLKK NCSEDEESGV KEEKDRDKMN 120 WMRSVQLWNN NDCKNIGSKH NQKQNSVPQF MQGVREDCPL VNDGPFECNK NKTGSKTFTP 180 FKVCSIFPAT TMRKEDKMEI PGLSLLTPGT NNLREEVGSN GLSSKISGSI AESSTTTTNY 240 SNLRARPQTQ QQQNARKQRR CWSPELHRRF VNALQQLGGS QAATPKQIRD LMQVDGLTND 300 EVKSHLQKYR LHTRRLPNAT GTPANQPLVL SGGLWMPQDQ NGESSKQSSS QSGSPQGPFH 360 LAGTGGGTST TGGESMEEED DEAKSESYCW KSHIPMSGKV DV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-14 | 257 | 310 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-14 | 257 | 310 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-14 | 257 | 310 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-14 | 257 | 310 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028102050.1 | 1e-167 | myb family transcription factor EFM-like | ||||
TrEMBL | A0A2R6RH94 | 0.0 | A0A2R6RH94_ACTCH; Myb family transcription factor EFM like | ||||
STRING | VIT_03s0063g01060.t01 | 1e-159 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4361 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 2e-54 | G2-like family protein |