PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn233031
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 446aa    MW: 49030.3 Da    PI: 5.4239
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn233031genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.6e-092272592254
                 SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 ++yp+ +++  LA+++gLt +qV++WF N R +
  Achn233031 227 HPYPKDSDKSMLARQTGLTRSQVSNWFINARVR 259
                 79*****************************88 PP

2BELL123.96.6e-4084155172
        BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 erq+lq k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iS hFrcL+d i++qi
  Achn233031  84 ERQDLQDKLTKLLSMLDEVDRRYKQYYHQMQIVASSFDVIAGCGAAKPYTALALQTISCHFRCLRDTITGQI 155
                 799*******************************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-4017153IPR006563POX domain
PfamPF075261.3E-3766152IPR006563POX domain
PROSITE profilePS5007112.455200263IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-28202275IPR009057Homeodomain-like
SMARTSM003894.6E-10203267IPR001356Homeobox domain
CDDcd000863.93E-13203264No hitNo description
SuperFamilySSF466892.31E-17204270IPR009057Homeodomain-like
PfamPF059201.3E-18220259IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MATFSPNSDN QRHAAPMVYL SESLPSSYSE TPVFPGNMML YMNYLSSSGS CTDTLAGNSQ  60
PNSCNNIPPP ETVSNSPREL SAAERQDLQD KLTKLLSMLD EVDRRYKQYY HQMQIVASSF  120
DVIAGCGAAK PYTALALQTI SCHFRCLRDT ITGQIQASRR SLGEQDVSEN GKGVRISRLR  180
YVDQHLRQQR ALQQLGMMQQ HAWRPQRGLP ESSVSILRAW LLEHFLHPYP KDSDKSMLAR  240
QTGLTRSQVS NWFINARVRL WKPMVEEMYK EETGDTELES NSSSEAEPKA TKGDISASED  300
RGQDLQQNAT SAATDVEMVG STVNNTFGGT ETEYGLVQSN GEQRPGAEDG NFYPDTIVQS  360
DGGSGRFMTT GASYRISELG SFGNGSGVSL TLGLKHFEGG NLPISVENHH SFVTMRGDDV  420
YNTASSVGLQ AADFGNSHLF HDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16209266158Homeobox protein Meis1
4xrs_B2e-16209266158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028081669.10.0BEL1-like homeodomain protein 7
RefseqXP_028081670.10.0BEL1-like homeodomain protein 7
SwissprotQ9SIW11e-118BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBLA0A2R6RHE90.0A0A2R6RHE9_ACTCH; BEL1-like homeodomain protein 6
STRINGPOPTR_0009s12360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102052226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-109BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]