PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn233031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | TALE | ||||||||
Protein Properties | Length: 446aa MW: 49030.3 Da PI: 5.4239 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.5 | 2.6e-09 | 227 | 259 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++yp+ +++ LA+++gLt +qV++WF N R + Achn233031 227 HPYPKDSDKSMLARQTGLTRSQVSNWFINARVR 259 79*****************************88 PP | |||||||
2 | BELL | 123.9 | 6.6e-40 | 84 | 155 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+lq k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iS hFrcL+d i++qi Achn233031 84 ERQDLQDKLTKLLSMLDEVDRRYKQYYHQMQIVASSFDVIAGCGAAKPYTALALQTISCHFRCLRDTITGQI 155 799*******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.3E-40 | 17 | 153 | IPR006563 | POX domain |
Pfam | PF07526 | 1.3E-37 | 66 | 152 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.455 | 200 | 263 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-28 | 202 | 275 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.6E-10 | 203 | 267 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.93E-13 | 203 | 264 | No hit | No description |
SuperFamily | SSF46689 | 2.31E-17 | 204 | 270 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.3E-18 | 220 | 259 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MATFSPNSDN QRHAAPMVYL SESLPSSYSE TPVFPGNMML YMNYLSSSGS CTDTLAGNSQ 60 PNSCNNIPPP ETVSNSPREL SAAERQDLQD KLTKLLSMLD EVDRRYKQYY HQMQIVASSF 120 DVIAGCGAAK PYTALALQTI SCHFRCLRDT ITGQIQASRR SLGEQDVSEN GKGVRISRLR 180 YVDQHLRQQR ALQQLGMMQQ HAWRPQRGLP ESSVSILRAW LLEHFLHPYP KDSDKSMLAR 240 QTGLTRSQVS NWFINARVRL WKPMVEEMYK EETGDTELES NSSSEAEPKA TKGDISASED 300 RGQDLQQNAT SAATDVEMVG STVNNTFGGT ETEYGLVQSN GEQRPGAEDG NFYPDTIVQS 360 DGGSGRFMTT GASYRISELG SFGNGSGVSL TLGLKHFEGG NLPISVENHH SFVTMRGDDV 420 YNTASSVGLQ AADFGNSHLF HDFVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 209 | 266 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 209 | 266 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028081669.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Refseq | XP_028081670.1 | 0.0 | BEL1-like homeodomain protein 7 | ||||
Swissprot | Q9SIW1 | 1e-118 | BLH7_ARATH; BEL1-like homeodomain protein 7 | ||||
TrEMBL | A0A2R6RHE9 | 0.0 | A0A2R6RHE9_ACTCH; BEL1-like homeodomain protein 6 | ||||
STRING | POPTR_0009s12360.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10205 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 1e-109 | BEL1-like homeodomain 7 |
Publications ? help Back to Top | |||
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