PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn232901 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | GATA | ||||||||
Protein Properties | Length: 339aa MW: 36947.9 Da PI: 4.8005 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.9 | 1.4e-18 | 252 | 285 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++ kTp+WR gp g ktLCnaCG+++++ + Achn232901 252 CSHCQVQKTPQWRAGPLGAKTLCNACGVRFKSGR 285 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.9E-83 | 7 | 334 | IPR016679 | Transcription factor, GATA, plant |
PROSITE profile | PS50114 | 11.398 | 246 | 282 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 1.0E-13 | 246 | 300 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.76E-13 | 248 | 309 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.9E-14 | 250 | 283 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.70E-13 | 251 | 300 | No hit | No description |
Pfam | PF00320 | 2.1E-16 | 252 | 285 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 252 | 277 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MEYCIEARAL KSSVLSELAV KLNQQALFDE LLCVNGINGV TCDDFSVDVF LDLSNEELTD 60 NFVEEESEEE EKDSLSTTSQ ARFEDDNSNS TTFSGAGDSG SISAGELTVP VDDFDDLEWL 120 SQFVDDPVSE SSLLCPAGDF KDSTSVYRPE PESRQVIQRT PVLCFSSPVP AKARSKRARP 180 SGRAWYRDSP SVSDSSSTPS SSSGSSQTSV LFFSKPVRDL GDGVLKPPAK KQKRPTAERG 240 GEAGGSQTQR RCSHCQVQKT PQWRAGPLGA KTLCNACGVR FKSGRLFPEY RPACSPTFSG 300 DVHSNSHRKV LEMRRKKEVT GPESGFTSMF RVFETDLG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028116845.1 | 1e-125 | GATA transcription factor 5-like | ||||
Refseq | XP_028116847.1 | 1e-125 | GATA transcription factor 5-like | ||||
Refseq | XP_028116848.1 | 1e-125 | GATA transcription factor 5-like | ||||
TrEMBL | A0A2R6RHF7 | 0.0 | A0A2R6RHF7_ACTCH; GATA transcription factor | ||||
STRING | XP_009631302.1 | 1e-102 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1154 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 4e-61 | GATA transcription factor 5 |