PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn232901
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 339aa    MW: 36947.9 Da    PI: 4.8005
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn232901genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.4e-18252285134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 Cs+C++ kTp+WR gp g ktLCnaCG+++++ +
  Achn232901 252 CSHCQVQKTPQWRAGPLGAKTLCNACGVRFKSGR 285
                 *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.9E-837334IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.398246282IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-13246300IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-13248309No hitNo description
Gene3DG3DSA:3.30.50.101.9E-14250283IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.70E-13251300No hitNo description
PfamPF003202.1E-16252285IPR000679Zinc finger, GATA-type
PROSITE patternPS003440252277IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEYCIEARAL KSSVLSELAV KLNQQALFDE LLCVNGINGV TCDDFSVDVF LDLSNEELTD  60
NFVEEESEEE EKDSLSTTSQ ARFEDDNSNS TTFSGAGDSG SISAGELTVP VDDFDDLEWL  120
SQFVDDPVSE SSLLCPAGDF KDSTSVYRPE PESRQVIQRT PVLCFSSPVP AKARSKRARP  180
SGRAWYRDSP SVSDSSSTPS SSSGSSQTSV LFFSKPVRDL GDGVLKPPAK KQKRPTAERG  240
GEAGGSQTQR RCSHCQVQKT PQWRAGPLGA KTLCNACGVR FKSGRLFPEY RPACSPTFSG  300
DVHSNSHRKV LEMRRKKEVT GPESGFTSMF RVFETDLG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028116845.11e-125GATA transcription factor 5-like
RefseqXP_028116847.11e-125GATA transcription factor 5-like
RefseqXP_028116848.11e-125GATA transcription factor 5-like
TrEMBLA0A2R6RHF70.0A0A2R6RHF7_ACTCH; GATA transcription factor
STRINGXP_009631302.11e-102(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-61GATA transcription factor 5