PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn232411
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 697aa    MW: 78974.2 Da    PI: 9.212
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn232411genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.4e-1772162198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 f k+ +ps+++ ++ l++p +fa+ +g++   s+  tl+ +sgr W+v +  +k + +++l +GWkeF++ + +  g f+vF ++g+s+f  +v +f+
  Achn232411  72 FYKIIVPSMMNDHK-LRIPEDFAKIYGNE--LSTFATLTVPSGRDWRVGV--EKADTMIWLHDGWKEFAEHHSISCGFFIVFNYEGNSNF--YVLIFD 162
                 66778888877776.********877744..8899***************..**********************************9999..999997 PP
2B355.21.3e-17433505986
                 HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
          B3   9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                 +v+ s +l++p +f+ ++  g    +sk ++l+ ++ ++W+v++   +  g  +l+kGW+ Fv++n+L egD++vF++++
  Achn232411 433 NVHHSFMLYIPSRFV-KYlnG----GSKIVKLQVSEEKQWTVRC--VRANGCAYLSKGWSIFVNDNHLVEGDVCVFEFIQ 505
                 45666899*******.66333....5678***************..555555679**********************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-2267163IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-2268163IPR015300DNA-binding pseudobarrel domain
CDDcd100175.92E-1670162No hitNo description
PROSITE profilePS5086313.49371164IPR003340B3 DNA binding domain
PfamPF023623.9E-1472162IPR003340B3 DNA binding domain
SMARTSM010191.2E-1272164IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.7E-22416505IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-21418505IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-20423506No hitNo description
SMARTSM010192.8E-15424512IPR003340B3 DNA binding domain
PROSITE profilePS5086312.731425521IPR003340B3 DNA binding domain
PfamPF023623.9E-16433505IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-6506542IPR015300DNA-binding pseudobarrel domain
HamapMF_0039612.385660693IPR012595PetM of cytochrome b6/f complex subunit 7
SuperFamilySSF1034412.01E-10661693No hitNo description
PfamPF080411.2E-9663689IPR012595PetM of cytochrome b6/f complex subunit 7
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009512Cellular Componentcytochrome b6f complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MSKLQTLLLV EFIYPIAKRK NYPKKQRETI KYGKKTKKKF EKEGNQSTGR MGPSGGDRRL  60
PNSPAATSPR SFYKIIVPSM MNDHKLRIPE DFAKIYGNEL STFATLTVPS GRDWRVGVEK  120
ADTMIWLHDG WKEFAEHHSI SCGFFIVFNY EGNSNFYVLI FDLTAAEIHY PRNTLGNSEE  180
PNHGKQCPLS NKGKRGRGDF VETLCCSVPR PVCVSLENNN FDEFLYRRIG TECNRSYLKK  240
LFEFAPEFSL RMYKHGRFLT TNKRHKMAGE LKIVKLENVT MSCEGNPKAS EMPNSHGSLL  300
DKPKKEKHNL TKNFENLHEE VPFLRHCGPS SENKLKTRIN DENNSVLIQE ATRRSNDIGS  360
QFSEVRYTES ADGQQLKVTH EDEEELVLLS AKKSINSPPR QPATTQEREK ALNAAKMFKP  420
QNPFFMVILQ LYNVHHSFML YIPSRFVKYL NGGSKIVKLQ VSEEKQWTVR CVRANGCAYL  480
SKGWSIFVND NHLVEGDVCV FEFIQTFVED NSMELGDFLA FHYIGNWVFD FKVLGRTGCN  540
KDVEEEEEYE EREGEEVRNL KQTLWAKLHI MATVVLSPAT FSVTTPTAGP ARSIQRTKPS  600
VTYIGGASSF RGLEAHNCVA SLGRPVRSQQ GSARFVGSLR LPFRGNGRRR GGVMAAKCSA  660
ADEIFRIATI MNGLVLVGVA VGFVLLRIEA FVEEAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-2639752421146B3 domain-containing transcription factor VRN1
4i1k_B4e-2639752421146B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6RH890.0A0A2R6RH89_ACTCH; B3 domain-containing transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-29B3 family protein