PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn232401
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 413aa    MW: 46295.1 Da    PI: 8.8079
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn232401genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3536.2e-17895598
                -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                ++ s+v   + l++p kf+++ g++   +   tl++++g +W+v l  +k ++++++t+GW eFvk + +++g  + F+++g+s+f  vv v++
  Achn232401  8 MIVSSVIHDKKLRIPGKFVKKLGNE--LPAVATLTTPNGCVWQVGL--KKMDDKVWFTNGWHEFVKHQSICVGYLLFFTYVGNSNF--VVNVYD 95
                6679999999*********999855..8999***************..**********************************9999..888765 PP
2B359.27.1e-19292381497
                 E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 ++ +s+v k   l +p +fae++ gg+   +  + l+ ++g +W v++ ++++s +  l+kGW eFv++n L+egD++vF+l++  e  l+v++f
  Achn232401 292 IMRHSYVYKGIGLHMPSSFAEKYlGGVL--G-FIALQVPNGGKWPVRCMWSNGSAK--LSKGWPEFVRDNMLDEGDVCVFELIKMGEIVLKVTIF 381
                 67899******************87773..3.59**************88888865..************************9876666777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.76E-17295No hitNo description
SuperFamilySSF1019363.92E-21395IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-20395IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.717497IPR003340B3 DNA binding domain
SMARTSM010192.0E-12597IPR003340B3 DNA binding domain
PfamPF023625.5E-14894IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.9E-23281382IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-24283385IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-21287381No hitNo description
SMARTSM010199.5E-16288384IPR003340B3 DNA binding domain
PROSITE profilePS5086313.366289384IPR003340B3 DNA binding domain
PfamPF023629.3E-18292381IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MPPIFYRMIV SSVIHDKKLR IPGKFVKKLG NELPAVATLT TPNGCVWQVG LKKMDDKVWF  60
TNGWHEFVKH QSICVGYLLF FTYVGNSNFV VNVYDLGTAE INYQCHAMGS SEGWGCGNRC  120
QVLYKKEAED DDKVEILENK VLDENVDQQK LGEGCNASYV QYKGRNFNGI ELKSSRYAAN  180
GGNLRVGSVL SVERSTRDVG IQCGNIELKT SAYETRLHYL SQIPKISRKR NRGIGDESRV  240
SAKHKSESPA PGSETSCGTF LRRWRVVKPE EKERVLNESK MFQSQNPFCR VIMRHSYVYK  300
GIGLHMPSSF AEKYLGGVLG FIALQVPNGG KWPVRCMWSN GSAKLSKGWP EFVRDNMLDE  360
GDVCVFELIK MGEIVLKVTI FHVVEDADPV NQIPTKNLLQ VGQLGNGYDL NG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-3926338523144B3 domain-containing transcription factor VRN1
4i1k_B2e-3926338523144B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028102012.10.0B3 domain-containing transcription factor VRN1-like isoform X1
RefseqXP_028102013.10.0B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A2R6RHA80.0A0A2R6RHA8_ACTCH; B3 domain-containing transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-78B3 family protein