PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn230341
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 199aa    MW: 21553.3 Da    PI: 5.7467
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn230341genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-194089255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ykGVr++  +g+WvAeIr+p  ng   r +lg+f+t  eAa a++aa++kl+g
  Achn230341 40 TYKGVRQRT-WGKWVAEIREP--NG-GDRLWLGTFDTSREAAIAYDAAARKLYG 89
                69****999.**********9..33.5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.71E-213999No hitNo description
SuperFamilySSF541712.68E-214097IPR016177DNA-binding domain
PROSITE profilePS5103221.6944097IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-294098IPR001471AP2/ERF domain
SMARTSM003803.7E-3540103IPR001471AP2/ERF domain
PfamPF008477.5E-144089IPR001471AP2/ERF domain
PRINTSPR003671.6E-94152IPR001471AP2/ERF domain
PRINTSPR003671.6E-96379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MLKSVMGMGE KNKPAKKTLR ATSRKGCMRG KGGPENAACT YKGVRQRTWG KWVAEIREPN  60
GGDRLWLGTF DTSREAAIAY DAAARKLYGP EAKLNLPELR AAVHTQQSPS VSLLCDSTSG  120
AHTSESVGEN DIGIDAIREN LNANLPDFDD SSMWAEATAS MDFQAMTDPG IFFEDGMGPW  180
CYCSTLPESH AFCSMSML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-164197360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079113.13e-70dehydration-responsive element-binding protein 2D-like
SwissprotQ9LQZ26e-57DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A2R6PZQ01e-145A0A2R6PZQ0_ACTCH; Dehydration-responsive element-binding protein like
STRINGBra015840.1-P6e-57(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.12e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]