PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn229091
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 397aa    MW: 44142.6 Da    PI: 4.143
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn229091genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-194595155
         AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Achn229091 45 KKFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 95
                589*******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.89E-3245102No hitNo description
SMARTSM003805.0E-3546109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2746102IPR001471AP2/ERF domain
PfamPF008476.6E-144695IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-1946103IPR016177DNA-binding domain
PROSITE profilePS5103219.53346103IPR001471AP2/ERF domain
PRINTSPR003675.7E-84758IPR001471AP2/ERF domain
PRINTSPR003675.7E-86985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MARKRKAGEG AAAEENPNEE NLGWDEMMGE DAAAAALGGP LKTRKKFVGV RQRPSGRWVA  60
EIKDTIQKIR VWLGTFDTAE EAARAYDEAA CLLRGANTRT NFWPCSPLST LTPALPSKVT  120
KLLLHRLNAR NNSLAASSTS SYVSINQQQQ QEEEYIDEVS DFSDSQFTDF LNDHEDYVTT  180
DNSMIIDNNA SFGESMTRSF ESCLIEQTSC GVREQDFDYN CSGLGQSYSD DANPGGEIEE  240
DGEEEGTDLG VVDFQFVDEV GSCYYSPFEI AEEISEPMEQ EFCGDEPSML TEAMKRMKYE  300
RKYSASLYAF NGIPECLRLK LGSGSTVKQR ERSDLLTHLW NACNENKEEK KIESNALGDK  360
EEKIEQSSSD MGFSMSNEGE SSLWGSLDLP PICYIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-13461021471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028096612.11e-171ethylene-responsive transcription factor ERN1-like
TrEMBLA0A2R6RKE60.0A0A2R6RKE6_ACTCH; Ethylene-responsive transcription factor RAP2-11 like
STRINGcassava4.1_008867m1e-149(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43102037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-22related to AP2 11