PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn229041
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 268aa    MW: 29890.3 Da    PI: 4.8037
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn229041genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.4e-0941801148
                     HHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 11 llvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                     +++d+++ + +    +W++Ia++++  Rt++++k++w+++l
       Achn229041 41 KFIDVINTYCTCildQWAAIASYLP-ERTDNDIKNYWNTHL 80
                     799999999988999**********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001673.40E-74080No hitNo description
PROSITE profilePS500906.4354080IPR017877Myb-like domain
PfamPF002491.0E-74180IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-84185IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-125589IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MALRREHGPG NWRSVPTNTG EFSLLGFIVL APRFCYVLRR KFIDVINTYC TCILDQWAAI  60
ASYLPERTDN DIKNYWNTHL KKKLQEAPTN GHSMVGSSNA YTISRGQWEK RLQTDINRAK  120
QALHEALSLE EPNPNVPQLK PYNGSAYASS TENIARLLKG WVKNSPKQAQ ENSSTTMNDS  180
VSSEGTQIGQ KQCGVDLSEA FESFFGFESS NSDFSESMSP EGSGRKPDVG DQNPLSMLED  240
WLLDECGVVQ GKEDLANFSF DEVVELF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109092.14e-95myb-related protein 306-like
TrEMBLA0A2R6RKA31e-158A0A2R6RKA3_ACTCH; Myb-related protein
STRINGVIT_14s0108g00830.t017e-79(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74650.15e-42myb domain protein 31