PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn228661
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRF
Protein Properties Length: 415aa    MW: 46317.1 Da    PI: 9.9219
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn228661genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.18.9e-25139183145
         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Achn228661 139 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 183
                 79****************************************986 PP
2QLQ63.17.1e-2278113237
         QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                 +FTaaQ+ +L++Q+l+yKyL+a++PvP eL+++iq+
  Achn228661  78 PFTAAQWKELEHQALIYKYLVAGLPVPTELVVPIQR 113
                 9*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.9E-1377113IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.77178113IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.6E-1678112IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.762139183IPR014977WRC domain
PfamPF088795.2E-21140182IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MRNKKVGIYG NKIQSIASPI SVTEYRKFLL QVKGVIRALR WEEEKKGKRK RKRRSERGSE  60
MSGASSSVEA AGLGFRPPFT AAQWKELEHQ ALIYKYLVAG LPVPTELVVP IQRSLESISA  120
RFFHQSGLGY CSYYGKKIDP EPGRCRRTDG KKWRCSKDAY PDSKYCERHM HRGRNRSRKP  180
VESQSSSQSL STVISHSTSG SSSGTGSFQN LPLRSLVDNE DSLIGGNASK WQIEPLSYGN  240
NKEYRYLHGV KPEADKQSFL PEGSGSVRVL GLDRNVDSTW NLTPSCFQVD SAPNPSYGSQ  300
EDFELMNNAT MSRQRQQHCF FGSDTGSAKQ ESNSMRPFFD GWPKARDSWA NLDDQRYDKN  360
TFSTTQLSIS VPTPLSEISP RSACSPNAKT VGWSVTIAEL LVVKTYACFV LLSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14452KKGKRKRKR
24753KRKRKRR
34853RKRKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754474e-52HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755204e-52HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028121085.11e-166growth-regulating factor 4-like isoform X1
SwissprotQ6AWY63e-85GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLA0A2R6PIL30.0A0A2R6PIL3_ACTCH; Growth-regulating factor like
STRINGXP_009605688.11e-141(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-47growth-regulating factor 5