PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn226931
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 325aa    MW: 36418.2 Da    PI: 9.5195
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn226931genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.26.7e-53151421128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+++d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++l++ +++
  Achn226931  15 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-TIIADIDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAAISGYWKATGTDKPILTSnGSQ 112
                 79****************************.89***************8888999*************************************9986788 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +vg+kk Lvfy g+ pkg kt+W+mheyrl
  Achn226931 113 KVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142
                 8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-639176IPR003441NAC domain
PROSITE profilePS5100561.42115176IPR003441NAC domain
PfamPF023651.5E-2716142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MESTDSSRGS PHPNLPPGFR FHPTDEELVV HYLKKKAASV PLPVTIIADI DLYKFDPWEL  60
PSKATFGEQE WYFFSPRDRK YPNGARPNRA AISGYWKATG TDKPILTSNG SQKVGVKKAL  120
VFYGGKPPKG IKTNWIMHEY RLVDSNSRTK HPPIDPGNKK RSLRLDDWVI CRIYNKNNSN  180
RPMEREKEDF MENHQMLLST SIIDGNSNQR LAASKACTFG ALLEHEDNLF EGIRQNSSIS  240
HLAPPSKKTD LPMVSSLSHG PVMKLNSPVQ YWSELGSDGS KGFQGDQMVG NGSSFVSLLN  300
QVPPETAPFH PTTPYHLPNM NWNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-741417916168NO APICAL MERISTEM PROTEIN
1ut4_B3e-741417916168NO APICAL MERISTEM PROTEIN
1ut7_A3e-741417916168NO APICAL MERISTEM PROTEIN
1ut7_B3e-741417916168NO APICAL MERISTEM PROTEIN
3swm_A3e-741417919171NAC domain-containing protein 19
3swm_B3e-741417919171NAC domain-containing protein 19
3swm_C3e-741417919171NAC domain-containing protein 19
3swm_D3e-741417919171NAC domain-containing protein 19
3swp_A3e-741417919171NAC domain-containing protein 19
3swp_B3e-741417919171NAC domain-containing protein 19
3swp_C3e-741417919171NAC domain-containing protein 19
3swp_D3e-741417919171NAC domain-containing protein 19
4dul_A3e-741417916168NAC domain-containing protein 19
4dul_B3e-741417916168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028120869.11e-150NAC transcription factor 25-like
SwissprotQ8GY421e-102NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A2R6RAU70.0A0A2R6RAU7_ACTCH; NAC transcription factor
STRINGEOY283341e-141(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18142466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-104NAC domain containing protein 25