PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn226291 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ERF | ||||||||
Protein Properties | Length: 383aa MW: 42810.2 Da PI: 5.0158 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.2 | 2.4e-19 | 109 | 158 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a ++k++g Achn226291 109 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARKIRG 158 69*******.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-32 | 109 | 168 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-38 | 109 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-22 | 109 | 168 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.329 | 109 | 166 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.39E-33 | 109 | 167 | No hit | No description |
PRINTS | PR00367 | 1.1E-11 | 110 | 121 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-12 | 110 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MCGGAIISDF IAPTSNRRLI ENLLWPSDVK KNPTNYHSKP LRSEIVDLED DFEADFQDFK 60 DESDAEDNDF KSFAFSASKS GVYDGSRSPK SVKLNGHAEK SAKRKRKNQY RGIRQRPWGK 120 WAAEIRDPRK GVRVWLGTFN TAEEAARAYD AEARKIRGRK AKVNFPDEAP PNAPKRTIKA 180 NTQKVLAKES TNSVQPNLNQ NFNFTNNPEN EYYSMNFEEE KPLTRQFGYT GAYPVPGEVG 240 HKSSTPSAGA TLYFNSDQGS NSFDCSDFGW GEYNTKTPEI SSVLSTTIEC DEAQFVDNAN 300 PTKKLKTKLE DVGPVQENTV GKLSEELSAF ESQMKFFQIP YLEGNWDASV DTFLNGDATQ 360 DGGSLMNLWT FDDFPSMTGG VY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-21 | 109 | 166 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 9e-21 | 108 | 168 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ869856 | 0.0 | GQ869856.1 Actinidia deliciosa ethylene response factor 5 (ERF5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028064263.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
Swissprot | Q9SSA8 | 2e-78 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A2R6PVB6 | 0.0 | A0A2R6PVB6_ACTCH; Ethylene-responsive transcription factor RAP2-12 like | ||||
STRING | XP_009775920.1 | 1e-171 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 2e-74 | related to AP2 12 |