PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn225741
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 1011aa    MW: 110767 Da    PI: 4.8949
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn225741genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151959748
                     HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +Ede+++++v+++G++ W++I+++++ gR +kqc++rw+++l
       Achn225741 19 QEDEKIIELVREYGPKKWSSISQHLP-GRIGKQCRERWHNHL 59
                     7*************************.*************97 PP
2Myb_DNA-binding48.81.6e-1565107145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eE++ l++a++ +G++ W+   + ++ gR+++ +k++w+
       Achn225741  65 KQAWTQEEELALIRAHQIYGNK-WAELTKLLP-GRSDNAIKNHWN 107
                      799*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.817159IPR017930Myb domain
SMARTSM007171.0E-111261IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-241966IPR009057Homeodomain-like
CDDcd001671.34E-131959No hitNo description
PfamPF139215.0E-161973No hitNo description
SuperFamilySSF466892.7E-2739115IPR009057Homeodomain-like
PROSITE profilePS5129424.16260114IPR017930Myb domain
SMARTSM007171.2E-1464112IPR001005SANT/Myb domain
CDDcd001673.27E-1167107No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2167114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1011 aa     Download sequence    Send to blast
MDNRGGLHKL ESYHVIFVQE DEKIIELVRE YGPKKWSSIS QHLPGRIGKQ CRERWHNHLN  60
PNINKQAWTQ EEELALIRAH QIYGNKWAEL TKLLPGRSDN AIKNHWNSSV KKKLDSYLAS  120
GLVAQLQGLP HVSHINQPVH SFSSTVQQNS DDDTVPKDDG TEAEEISECS QGSTVVGCSQ  180
PTSDMANAVA HKSDECRLTE ESSIGKDTSF SPASCSQTYH MAFQEVAFSM PEVPKELGDF  240
SKFLEQNICY DSGNYAGKDG QLNSNELPNI TSLGSGQESS EFLIHCIGGN DNQVVVPFPF  300
QTSVGLSASS MGNMAFGSGK PGHMMVSEDG CCRVIYPEAE TDGCFSSGNL MSCSNTRSFI  360
GFTDSLLHQP SNYQIPEAVG NSTSQSYYPP RSDMLINSSS QPSQLPADDG AVFYCSDSNQ  420
FNDLSHANQQ EELVKHPNGG FICINDSTNP PCDNGTSNMG PQDQPDQEKD SSKIVPVDVF  480
RTGPSKNIQT PSLVNDNPIV PTEQQDAGSL FYEPPRFPSL DIPFFSCDLV QSGNDTQEEY  540
SPLGIRQLMM QPMNCFTPFR LWDSPSRNDS PDAVLKSAAK SFMCTPSILK KRNRDLVSPM  600
SEKIIEKKLG SDINHESFSS LARNFSRVDG MFEENGDKKA SLLSPSSIQK GKSRNSTNSK  660
ENLDRALDVR KEAGRDSSLD NVIPGKGLDS STTQDKIEQG SASVEDKSKG DSNVSTQNVQ  720
QLSGVLVEHD INDLLFFSPD RFEIKLDRSL GPSSRTLGNR FSRRLGATSN QGALSESLSG  780
NPYLSSILCS PSISGKKDEI QVAAATSAPA SASNPQDIVA GSSGNDAGVE NFSIFGGTPF  840
KRSIQSPSAW KSPWFINSFV PGPRVDTDIT IEDIGYFMSP GDRSYDAIGL MKQLSEHTAA  900
AFADAHEVLG DETPDTILKQ RCSYYQKPEQ DNIGVQNSLP ENHSLSSPNI LDKRRNEHRG  960
LLLLFFPGGV SERTDAPFAH MAVIPTGAIC CEIYLLERRE YYYRSTQSLT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-451911613110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124800.10.0transcription factor MYB3R-1-like isoform X1
RefseqXP_028124801.10.0transcription factor MYB3R-1-like isoform X1
RefseqXP_028124802.10.0transcription factor MYB3R-1-like isoform X1
RefseqXP_028124803.10.0transcription factor MYB3R-1-like isoform X1
RefseqXP_028124804.10.0transcription factor MYB3R-1-like isoform X1
TrEMBLA0A2R6QZL80.0A0A2R6QZL8_ACTCH; Myb-related protein like
STRINGcassava4.1_024255m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.21e-173Homeodomain-like protein